barSeed - Barley Seed Development Database

Probe CUST_13406_PI390587928

Source Contig U35_1622

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13406_PI390587928	Hv_44K_v2	TGTGTCCCGAACAGGCGTATAGAAAACGATACATACACCTAACACGGTCTCTATCTTGTG	699	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.164	2.758	1.194	0.789	0.332	0.482
Raw	177.805	354.491	131.558	142.090	19.655	31.688

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253003.1	2152	2e-24	2027 - 2086	100	60 / 60	plus	ABC49786
MLOC	MLOC_13966.1	790	2e-24	206 - 265	100	60 / 60	minus	ABC49786
JLOC1	JLOC1_9507.1	820	8e-25	89 - 148	100	60 / 60	minus
Harvest21	ABC49786	756	1e-23	1 - 57	100	57 / 57	minus	ABC49786
Harvest35	U35_1622	1069	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (1069 bp)

>U35_1622 1069 Hv_44K_v2
GCATGCAAGGGAAGAGATCATACTTGAGCTTCTCCGGCATTTGAGGGGAAGTGCCACAAG
AATCATTTTAGAGAGAGAGAGGAAGTCTGCAAGGGAGATGTTGGAGGAGCAGGAAGCTGT
CCGTGGCCGCTTGTTCACTATCCAGGATGTTATGCAGAGCACTGTTCGTGCATGGTTACA
GGATAGAAGCCTTCGTATCACCCACAACCTGGCTATTTTCGGCGGTGGGGGCATAGTTCT
CTCCATAATCACTGGTCTCTTTGGAATCAACGTGGATGGCATACCGGGAGCTCAGAACAC
TCCTTATGCTTTTGGGCTGTTCGCGGGGCTTCTCTTCTTCCTCGGGATCGTCCTTGTTGG
TGTCGGGTTGATGTACCTTGGGTTGACAAACCCAGTGACGAGTGAGAAGGTGAAGATGCG
GAAGCTAGGGCTCCAGCAGCTTGTTTCGATGTTCCAGCACGAGGCAGAGCAGCATGGGAA
AGTGAGGGAAGGCCTGAGCCGGCACGGCCTGTCGCCTAGTTCGGCTGCGGCTTCCAGTGA
TGAAGGCTACATCCTGATTTCCTGATCTCGCTAATGCCTCAAACTCTTGAATAGTACAGT
AGTATAAGCTTAGGCCACGTTGGAGAAGGTGGTGTTTTATCTGAGGGAAATCCCAGCTGT
CCCCGTGGGAAGTAAACTGATTCCAGTCCGATTCGTTCATGTGTCCCGAACAGGCGTATA
GAAAACGATACATACACCTAACACGGTCTCTATCTTGTGAGCGGCCGCTCAGGATAGTTT
CGGCAATTCCATAGATAGAGCAAATGTTCGTCGCACAAACTGTTATGTCAATTACAGGAA
TTATTCGATTGAGATGCGAAGGACATAGCTGCCATGACGATTGATCGGCAACCAGAAGCT
TCTTTAGCCTGGAGGCCAGTTCATCTGTCTGCCTCCAAGGAGATGGACATGGATGTGGTA
AACAGATTGACATCCACTAGGGCCATCATTGATGACAATACGGTAGCCATCTTCAAGTCC
TTCCTGCTTTGCGATAACTTTTGCAGCATAGAGGAGGCAGCCAAGTATC

Homology of Contig U35_1622 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g47460.1	559	9e-69	protein\|expressed protein
Brachypodium v1_2	Bradi2g45840.1	561	2e-76
Arabidopsis v10	None