barSeed - Barley Seed Development Database

Probe CUST_13404_PI390587928

Source Contig U35_1624

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13404_PI390587928	Hv_44K_v2	CGACGTATTCATTCGTGTAATGCCGACAATCGTAAACTCGACGAAATTGCCATCAAAAAA	315	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20748.1	989	3e-21	907 - 960	100	54 / 54	plus	ABC04901 ABC04902
MLOC	MLOC_20747.1	1134	3e-21	926 - 979	100	54 / 54	plus	ABC04901 ABC04902
JLOC1	JLOC1_14382.1	1071	2e-21	880 - 933	100	54 / 54	plus
Harvest21	ABC04902	832	6e-22	51 - 104	100	54 / 54	minus	ABC04902
Harvest21	ABC04901	761	6e-22	598 - 651	100	54 / 54	plus	ABC04901
Harvest35	U35_1624	386	3e-25	316 - 375	100	60 / 60	plus
Harvest35	U35_1623	765	6e-22	605 - 658	100	54 / 54	plus

Contig Sequence (386 bp)

>U35_1624 386 Hv_44K_v2
GAGGCATGAGCGACGGACAGGGCAATGCTCCTCCTGGAGGCTACTTCATCGGCCGTCCGG
CAAACACCGACGAGCCCAAGGAGAAAGAACCGCCGCCTAAACCGAGCTTCTTGGCCAAAT
TCTGTCCATGCCTCGCCGGCGGTGGAGCTACCAGCTAGACCGACAAGCCCAGCCGTGGTG
AGCCGTGCACGTGACCGCGGGAGGATTTGAGGCGGAATCGGGTCCATAAGTCTCAATTCT
GTATTGGAACCGTGCGAGTCTCTTCATCTTTGGAAGCTCTGCTCTGTTTTTCTTTCCTCC
TCTAGCATTTGATTCCGACGTATTCATTCGTGTAATGCCGACAATCGTAAACTCGACGAA
ATTGCCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1624 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None