barSeed - Barley Seed Development Database

Probe CUST_13403_PI390587928

Source Contig U35_1625

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13403_PI390587928	Hv_44K_v2	TGAGTCTGGTACTGTGCTGTTCGGTTGGTGATTAGATAAAAAAGATAGTGCATTATTAAC	645	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369921	775	2e-24	664 - 723	100	60 / 60	plus	ABC04191
MLOC	MLOC_62913.1	4379	7e-23	4159 - 4219	98	60 / 61	plus	ABC04191 ABC13326 ABC13327
JLOC1	JLOC1_41197.1	1299	4e-23	951 - 1011	98	60 / 61	plus
Harvest21	ABC29743	102	3e-25	25 - 84	100	60 / 60	plus	ABC29743
Harvest21	ABC04191	768	3e-25	658 - 717	100	60 / 60	plus	ABC04191
Harvest35	U35_1625	760	3e-25	646 - 705	100	60 / 60	plus

Contig Sequence (760 bp)

>U35_1625 760 Hv_44K_v2
CCACCACCCTCCTAAACCCGCGAGCTCACAAGGAGGCGGCGGCGGCGGCGACAGCAGCAG
CAGAGAAACTATGGGGAGCGACACGGAGACGGAGAAGAAGAAGACCCCGGTGGCGCTGGC
GCCCATCGCCAAGCCGCTCGCCGGCAAGAAGCTCTCCAAGAAAACCCTCAAGCTCGTTCG
CCGAGCCTCGGAGGCCAAGTGCCTGAAGCGCGGGGTCAAGGAGGTGGTCAAGAGCATCCG
CCGTGGGAGCAAAGGGTTGTGTGTAATTGCTGGAAACATCTCTCCTATCGATGTGATTAC
ACATCTTCCCATACTTTGTGAGGAAGCCAATGTCCCATACATATATGTGACATCAAAAGA
GGAGCTTGCGACCGCGGGTACTACCAAGAGGCCCACCTGCTGCGTGTTGGTGATGACCAA
GCCAGCCAAGGGGGAGATCACTGAAGAGGTGAAGGAGAAACTGGAATCGGAATACAAGCA
GGTTGTAACTGAAGTCGCTGAGGTTACATCTTCTATGTTCTGAGAACATTTCCATGGCCA
GCCTGGAGGAACCATGAACATCTTTCTGTCTGTATTATGTAGCATGATTTTGTCACCCTA
TCGTTGCTAGTGATCGACGTGTTTATCAGGGAGTTTTAAGCATCGTGAGTCTGGTACTGT
GCTGTTCGGTTGGTGATTAGATAAAAAAGATAGTGCATTATTAACTAAAAAAAAAAAAAA
AAACTTTACCGTTGATGTTGCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_1625 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g16290.1	151	1e-89	protein\|ribosomal protein L7Ae, putative, expressed
Brachypodium v1_2	Bradi3g56240.1	151	4e-97
Arabidopsis v10	AT5G08180.1	156	3e-70	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein \| chr5:2631843-2633374 REVERSE LENGTH=156