barSeed - Barley Seed Development Database

Probe CUST_133_PI415269222

Source Contig TA28455_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_133_PI415269222	Hv_44K_v2	TGCTTCAACAGCTTGTCCCCATGTATGACTATAAGAATATCTCCAACCATGGACTAAGCC	1354	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.753	2.154	0.893	0.909	0.723	0.503
Raw	33.160	38.498	14.970	22.842	5.868	4.007

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_34628.2	1233	3e-24	1043 - 1101	100	59 / 59	plus
JLOC1	JLOC1_34628.1	2059	3e-24	1869 - 1927	100	59 / 59	plus
Harvest35	U35_3042	763	3e-25	636 - 695	100	60 / 60	plus

Contig Sequence (1414 bp)

>TA28455_4513 1414 Hv_44K_v2
GGCTAGCTCCTCTCTCTTTCTCTCTCTCTCTCTCTCTGAGTTTCCCTCTGCTTCATCAAG
CAAGCGAACGACCCACCGCTACTCTGCTTTGGAGAACGGAAACGAGAAGATGGCCGTCTC
TGTCTGCCTCGGCTCATCCCCATCCACTCCTCTGCTGCCGCCGCTCCTCTTCCTCTTCTT
CCTCTTCTGCTCCCTCCCGTCGCTCGCCTCCGCCTGCGACCGCTGCGCCCGCCACTCCAA
GGCCGCCTTCTACACCTCCTCGCTCACCCTCGCCGCCGGCTCCTGCGGGTATGGCACGGC
GGCCGCCTCCTTCAACGGCGGCCTGCTCGCCGCCGCCGGCACGGCCCTGTACCGCGGCGG
CGTCGGCTGCGGCGCGTGCTTCCAGGTGAGGTGCAAGGACAAGAAGCTCTGCAGCGGTGC
CGGCGCCAGGGTGGTCGTGACGGACCGCGCGAGGACGAGGACGAACCGCACGGACCTTGT
GCTGAGCAGCCCGGCGTTCGCCGCCATGGCCCGCCCCGGCATGGCCGCGCGGCTCACCAA
GCTCAGCGCCGTCGACGTCGAGTACAAGAGGGTGCCGTGCGAGTACAAGGGCAAGAACCT
CTCGCTGCGTGTGGAGGAGCGGAGCCGCGCGCCGAACAAGCTCGCCGTCCGGTTCCTCTA
CCAGGGCGGCCAGACCGACATCGTCGCCCTCGACGTCGCGAAGGTGGGGTCGTCGAGCTG
GAAGTTCATGACGCGGGAGCATGGGCCGGCGTGGAGCACGCGGCAGGCGCCGGCGGGGCC
GCTGCAGTTCAGGGTGGTGGTGACCGGCGGGTACGACGGCAAGTGGGTGTGGGCCGACCG
CGAGGTGCTGCCGCGACGGTGGCGCGCCGGCGAGGTCTACGACACGGGGGTCCAGATCAC
CGATATCGCGCAGGAGGGCTGCTTCCCGTGCGACACCCACGAGTGGAGGTGAAAGCAAAT
CGGGGATAGTAAACAAACAAACGATCGCCAACATGGAGCCGAAGAAGATGCTGCTTCTGG
CTCCTCGTTTTGGCCGGGCTACGCACGCACGCACGAAGGATCGCAGCACAGCACCACACC
AGACAGGGGAGGTGATTAGTTTAGTTTCACACGAGATGATGACTCGTAGCGGTAGCGTCC
TGCTGATCCATCGGCAACTTTGGCTGCCGCCTTTTCTTATTTTCTTTTCTCCTTGTTTTG
TGAGCCTTGTGTATATACTCACATACTTACATGAGCTGCTGACGTGAATGAAGAGAAGAT
AAGTAAGTAAATTAAGCAGAGCATATCCTGGGGAGTGGTAATATACAGAGGACGGCGTCA
CGGCGACGATAGGATATGTGTGTCGTAGCTTTGCTGCTTCAACAGCTTGTCCCCATGTAT
GACTATAAGAATATCTCCAACCATGGACTAAGCC

Homology of Contig TA28455_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g04020.1	280	1e-113	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi1g76260.1	270	2e-118
Arabidopsis v10	AT3G45970.1	265	1e-76	\| Symbols: ATEXLA1, EXPL1, ATEXPL1, ATHEXP BETA 2.1, EXLA1 \| expansin-like A1 \| chr3:16896238-16897189 FORWARD LENGTH=265