barSeed - Barley Seed Development Database

Probe CUST_1338_PI390587928

Source Contig U35_30079

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1338_PI390587928	Hv_44K_v2	AGATCACGGACGTGCAGGTGGAGATCCTGATGGGCATCCTGAGCATCTATTCGATCCTCG	214	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68500.1	2046	2e-24	474 - 533	100	60 / 60	plus	ABC06707
MLOC	MLOC_68500.2	2912	2e-24	474 - 533	100	60 / 60	plus	ABC06707
JLOC1	JLOC1_45325.1	2420	8e-25	392 - 451	100	60 / 60	plus
Harvest21	ABC29784	533	3e-25	215 - 274	100	60 / 60	plus
Harvest35	U35_30079	533	3e-25	215 - 274	100	60 / 60	plus

Contig Sequence (533 bp)

>U35_30079 533 Hv_44K_v2
CATGGGGGGTGGCATCCCTCTGTAACGACAGAGCAGCAAGGAGTAGCGTTGCCGATGGCT
TCGGCCGGGCTCCCAGAGGCAGTCGAACCGAAGAAGAAGAGCAACATCAAGTATGCCTCT
ACCTGCGCCGTCGTCGCCTCCATGGCCTCCATCGTCCTCGGCTACGACATCGGTGTGATG
AGCGGGGCATCGCTGTACATCCAAAAAGACCTCCAGATCACGGACGTGCAGGTGGAGATC
CTGATGGGCATCCTGAGCATCTATTCGATCCTCGGCTCCTTCGCCGCCGGCAGGACGTCC
GACTGGATCGGCCGCCGCTTCACGGTGATCTTTGTCGCCGCCTTCTTCTTTGCCGGTGCC
TTGCTGATGGGCTTCGCTAGCGGCTACGCCATGCTCATGCTCGGTCGCTTCGTGGCTGGC
ATCGGCGTGGGCTACGCGATCGTGATCGCGCCCCTGTACACGGCTGAGATCGCCCCGGCG
TCGGCGCGCGGCTTCCTCGTGTCCTTCACGGAGGTCTTCATCAACCTCGGTAT

Homology of Contig U35_30079 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g39350.1	578	7e-67	protein\|transporter family protein, putative, expressed
Brachypodium v1_2	Bradi1g23430.1	521	6e-73
Arabidopsis v10	AT2G16120.1	511	9e-58	\| Symbols: PMT1, ATPMT1 \| polyol/monosaccharide transporter 1 \| chr2:6996727-6998441 REVERSE LENGTH=511