barSeed - Barley Seed Development Database

Probe CUST_13388_PI390587928

Source Contig U35_387

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13388_PI390587928	Hv_44K_v2	CGCTCACGCTCAATTCGTGTGTAATAGTATATGCCTCATCTTGTTCCGTTCTTCAAAAAA	1195	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26335.1	798	9e-22	24 - 78	100	55 / 55	minus	ABC02669 ABC02670 ABC02673 ABC40934
JLOC1	JLOC1_17888.1	934	5e-22	722 - 776	100	55 / 55	plus
Harvest35	U35_387	1336	3e-25	1196 - 1255	100	60 / 60	plus

Contig Sequence (1336 bp)

>U35_387 1336 Hv_44K_v2
TCGAGCACTGTTGGCCTACTCACACAACACAAGCTCCCTTCCAGCTTTTCATCCTTCTCA
TCAACTTATTTGTCTTGTGACTTGTGCGTTGCTTCTGTTAAGCTAGCTAGTTGAGTGAGG
TTACTTTCTGGGAGCATGGCTCGCATGGCGGTGTCGGTGCTGGCGATCCTGCTCGCCTGG
TGCGCCCTGGCGGCGGCGAGCTTCGACAAGGAGTTCGACATCACCTGGGGCGACGGGCGT
GGCAAGATCCTGAACAATGGTCAGCTCCTGACGCTGGCGCTGGACAAGGTGTCCGGCTCC
GGGTTCCAGTCCAAGCACGAGTACCTCTTCGGCAAGATCGACATGCAGCTCAAGCTCGTC
CCCGGCAACTCTGCCGGCACCGTCACCGCATACTACCTGTCGTCGCAGGGGCCGACGCAC
GACGAGATCGACTTCGAGTTCCTGGGCAACGTCACCGGCGAGCCCTACACGCTGCACACC
AACGTGTTCACGCAGGGGCAAGGCCAACGGGAGCAGCAGTTTCGCCTCTGGTTCGATCCC
ACCAACGATTTCCACACCTACTCCATCCTCTGGAACCCAAAGCACATCATCTTCATGGTG
GACGACATGCCGATCAGAGACTTCAAGAACCTGGAGGGAAAAGGGATCGCCTTCCCCAAG
AACCAGCCCATGCGGCTCTACTCCAGCCTCTGGAACGCCGACGACTGGGCAACGCAGGGC
GGCCGCGTCAAGACGGACTGGTCCCACGCCCCGTTCTCGGCCTCCTATCGCGGCTTCAAG
GCAGACGCGTGCGTGGTGACCGCGGGCGGGCGGCCTCACTGCGGCGCCAGCGTCGGCACG
GACGTCGCGCCCGGCACAGGCGCGGCCGGCGAGTGGTACAACCAGGAGCTGGACCTGACG
CGGCAGCAGCGGATGCGGTGGGTACAGAGCAACTACATGATCTACAACTACTGCACCGAC
CCCAAGAGGTTCGCTCAGGGCGTCCCCGCCGAGTGCTCCATGTAGTGCCCTTGTCCGTCC
GTCCGTCCAGCAAGCTAGCATTGGACAGCCCGTGTATACGTCGATCGCCGGAGGAAGATG
ACCGGAGATAGGGAAGATGGAAGCGTCTGTACTGTATGATAAATAAGTACTGGTGTGGGG
GATAAGGTGAAATGTAGCCGGTGGTAGATTCTTCTGTTGCTCTTTGTCACGATCACGCTC
ACGCTCAATTCGTGTGTAATAGTATATGCCTCATCTTGTTCCGTTCTTCAAAAAAAAAAA
AAAAAAATTGCTACTCTCTGTTCCACTTTGCAATTGCAACGGCTTGTTGGTTGGATTAAA
AAAAAAAAAAAAAAAA

Homology of Contig U35_387 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48200.1	291	0.0	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi1g33840.1	294	0.0
Arabidopsis v10	AT5G57550.1	284	8e-142	\| Symbols: XTR3, XTH25 \| xyloglucan endotransglucosylase/hydrolase 25 \| chr5:23305055-23306384 REVERSE LENGTH=284