barSeed - Barley Seed Development Database

Probe CUST_13383_PI390587928

Source Contig U35_28204

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13383_PI390587928	Hv_44K_v2	ATACCATGTACATAACTGGATGGCCCGTCTATGTTGGTGTTTCTGTTGTGCTTGAAAAAA	246	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.061	3.198	1.048	0.717	0.233	0.299
Raw	114.101	256.094	79.466	84.378	10.039	13.575

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63857.6	1190	9e-22	1109 - 1163	100	55 / 55	plus	ABC26936
MLOC	MLOC_63857.5	1154	9e-22	1073 - 1127	100	55 / 55	plus	ABC26936
MLOC	MLOC_63857.4	1754	9e-22	1619 - 1673	100	55 / 55	plus	ABC12622 ABC26936
MLOC	MLOC_63857.2	1786	9e-22	1702 - 1756	100	55 / 55	plus	ABC12622 ABC26936
MLOC	MLOC_63857.3	1616	9e-22	1539 - 1593	100	55 / 55	plus	ABC12622 ABC26936
JLOC1	JLOC1_41866.1	1715	5e-22	1562 - 1616	100	55 / 55	plus
Harvest21	ABC26936	317	3e-25	247 - 306	100	60 / 60	plus	ABC26936
Harvest35	U35_28204	317	3e-25	247 - 306	100	60 / 60	plus

Contig Sequence (317 bp)

>U35_28204 317 Hv_44K_v2
GCTCAAGAGGTACTCCTGCAACGCACTGAAGCTAGCGCAGCCCGAAGCAGTGTTCGACAT
CGCGAGGGACATCCACAAGCTCCAGCCGCAACCAGCCGCTCTAACCCGGATCCCCTACTC
GTTGACTTCATCGTTCTCATACCATATATGAACTTTTGGAAACTCTTGCAGAATATACTC
TGCAAAGTGAATATGCCTTCAAACTTGGTTGTGGCTGGGCTTGGCTGCCTGCTGAAGAAC
CTGTATATACCATGTACATAACTGGATGGCCCGTCTATGTTGGTGTTTCTGTTGTGCTTG
AAAAAAAAAAAAAAAAA

Homology of Contig U35_28204 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None