- Probe CUST_13382_PI390587928
- Source Contig U35_28205
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13382_PI390587928 | Hv_44K_v2 | TCTGGGCGAGGCGGAAGAGTCTGATGATGATTTGGCTGCAATTATTCATAACATGGATGA | 602 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.935 | 0.797 | 1.775 | 1.451 | 1.214 | 0.933 |
| Raw | 24.177 | 30.317 | 63.943 | 70.904 | 24.527 | 20.203 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4537.5 | 2815 | 2e-24 | 1253 - 1312 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_4537.1 | 3839 | 2e-24 | 2394 - 2453 | 100 | 60 / 60 | minus | ABC24293 |
| MLOC | MLOC_4537.2 | 3848 | 2e-24 | 2389 - 2448 | 100 | 60 / 60 | minus | ABC24293 |
| MLOC | MLOC_4537.3 | 3864 | 2e-24 | 2389 - 2448 | 100 | 60 / 60 | minus | ABC24293 |
| MLOC | MLOC_4537.4 | 4002 | 2e-24 | 2389 - 2448 | 100 | 60 / 60 | minus | ABC24293 |
| JLOC1 | JLOC1_2837.2 | 3896 | 8e-25 | 1434 - 1493 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2837.1 | 3869 | 8e-25 | 1407 - 1466 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26939 | 665 | 3e-25 | 603 - 662 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28205 | 665 | 3e-25 | 603 - 662 | 100 | 60 / 60 | plus |
Contig Sequence (665 bp)
>U35_28205 665 Hv_44K_v2 GGCACCCAAAACTATGAACTCAACAACACTGCATCCATTTTTACTCCGGAAGAACTGCGT CAACAAGCAGTAGAAGAGAAGGGAAAGTACAAAATACTAAAGTCAGAAGGAAAACCTGAG GAAGCACTGCGGGCATTCAAGCATGGCAAAGAGCTTGAGAGGCAAGCCGCAGCACTTGAA TTAGAATTGAGGAAGAGCAGGAGAATGGCGACAAAAGCTCCCATTGTTAGTGCCGTTGTT GGTACCCAGAAGATTGAGGATTACGATGACGCTGTAACAAAAAAGGCTCCAAGTGGGAAA AGGGTTAGAAAAGAAAAGAATGATCTTGCTTCTGAACTCAAAGATCTAGGCTGGTCAGAT GCAGATCTTCATGATGAAACAAGGCCAACTGCTATGAGTGTTGAAGGAGAGCTGTCACAG ATTCTTAGAGAAGTAGCACCAAAGACATCAGAGGGCAAGAAAGCTGGTGGTATTGACAAA TCCCAGGTTAATGCTCTGAAGAGACAGGCCCTAGTGCTGAAGCGTGAAGGTAAACTTGCT GAAGCANAGGAAGAGCTGAAGAAGGCTAAAATTTTGGAAAGACAATTGGAAGAACAGGAG ATTCTGGGCGAGGCGGAAGAGTCTGATGATGATTTGGCTGCAATTATTCATAACATGGAT GATGA
Homology of Contig U35_28205 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g46710.1 | 1143 | 2e-79 | protein|expressed protein |
| Brachypodium v1_2 | Bradi3g47270.1 | 1090 | 2e-83 | |
| Arabidopsis v10 | None |