barSeed - Barley Seed Development Database

Probe CUST_13381_PI390587928

Source Contig U35_28209

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13381_PI390587928	Hv_44K_v2	CATATTTGCACATGGGATTGAAGATGAATTCTATCAGGTCCGGGCAGTTGCATGTACAAC	317	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.758	0.588	1.671	1.580	1.661	0.938
Raw	8.630	8.596	25.697	32.183	13.373	8.149

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33094.1	1496	2e-24	793 - 852	100	60 / 60	plus	None
JLOC1	JLOC1_21488.1	1551	8e-25	809 - 868	100	60 / 60	plus
Harvest21	ABC26945	405	3e-25	318 - 377	100	60 / 60	plus
Harvest35	U35_28209	405	3e-25	318 - 377	100	60 / 60	plus

Contig Sequence (405 bp)

>U35_28209 405 Hv_44K_v2
CCAACTGCAGNACTCCGCACNGGGGCCGCTGTGCGATTGGTTGGCCTTTGTGTGGAGAAG
TTTGCCATGAGAGAGGAGTTGGGTGGTGATGGTGACCAAATGGACCGGATTTTCCTACAG
CTTAGCTCCATGGCTAGGGACATGTGTACAGAAGTAAGAATTGAAGCATTCAACGCACTT
GCCAAAATGCAGAGAGTATCCGACGGTGTCTTGCTTCAGTCGCTGTCTAAGAAGATTATA
AAAACTGACACTGGGAGTGCCTCTAGCAGCAAAGGGAAAACACTACCACCTAAATTATCA
TTTCCCTGTGCTGCTGGCATATTTGCACATGGGATTGAAGATGAATTCTATCAGGTCCGG
GCAGTTGCATGTACAACGCTGGGAGCTCTTGCAAAACTTTCAAAC

Homology of Contig U35_28209 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g66130.1	806	9e-54
Arabidopsis v10	None