barSeed - Barley Seed Development Database

Probe CUST_13370_PI390587928

Source Contig U35_16233

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13370_PI390587928	Hv_44K_v2	ATGATAAGATTCTGCAACAGAAGAAAGCTAACCCCGTTGCTCTGTTTCTCTCGTCTGCCA	993	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253012.1	1469	2e-24	1015 - 1074	100	60 / 60	plus	ABC06616 ABC06617 ABC52206
MLOC	MLOC_56785.1	820	2e-24	355 - 414	100	60 / 60	minus	ABC06617 ABC52206
JLOC1	JLOC1_36758.1	905	8e-25	405 - 464	100	60 / 60	plus
Harvest21	ABC06617	1462	3e-25	994 - 1053	100	60 / 60	plus	ABC06617
Harvest35	U35_16233	1461	3e-25	994 - 1053	100	60 / 60	plus

Contig Sequence (1461 bp)

>U35_16233 1461 Hv_44K_v2
TTCCTTCTCCTTCCCCATCCCAGCCCGCCTCCGCTCATCCTTCTGGACACGGCGCCGATC
GCATCCACCCCGAAACCCTAGCCGGACTCACCATGGCGCGGCGATCCGCCCCTCTCCTCC
GGCGCCTCCTATCCCCGGCCCCTCCCTCCCCCCTCGCTGGCGCCGTGTCCCGCCGTACCG
TCACCTACATGCCGCGCCCCGGCGACGGCGCCCCGCGCACCGTCACGCTCATCCCGGGCG
ACGGCATCGGGCCCCTCGTGACCGGCGCCGTGCGCCAGGTGATGGAGGCAATGCACGCGC
CGGTCTGCTTCGAGACGTACGAGGTCCACGGCGACATGCCATCGGTGCCTACCGAGGTCA
TCGAGTCCATCCGCCGCAACAAGGTCTGCCTCAAGGGCGGTCTCGCTACGCCCGTCGGCG
GAGGTGTCTCCTCCCTCAACCTGCAGCTGCGGAAGGAGCTCGACCTCTACGCTTCCCTTG
TCAATTGCTTCAACCTCCCTGGGCTGCCCACCAGGCACGAGAACGTCGACATCGCCGTCA
TCAGGGAGAACACGGAGGGCGAGTACTCGGGCCTCGAGCACGAGGTCGTGCCTGGCGTCG
TCGAGAGCCTCAAGGTGATGACGAAGTTCTGCTCTGAAAGGATTGCCAAATACGCCTTTG
AGTATGCTTACCTCAACAATAGAAAGAAAGTGACGGCAGTGCATAAAGCAAACATCATGA
AGCTAGCTGATGGTTTGTTCCTGGAGTCCTGCCGTGAGGTTGCGACGAAGTATCCTGGAA
TTCAATATAATGAAATCATTGTGGACAACTGCTGTATGCAGCTTGTTGCAAAACCTGAAC
AGTTTGATGTTATGGTCACCCCAAATCTTTATGGCAACCTGGTGTCCAATGTGGCTGCAG
GTATTGCTGGGGGCACTGGTGTCATGCCTGGAGGCAATGTTGGTCAGGACCATGCGGTCT
TTGAGCAGGGTGCTTCTGCCGGAAATGTTGGAAATGATAAGATTCTGCAACAGAAGAAAG
CTAACCCCGTTGCTCTGTTTCTCTCGTCTGCCATGATGCTGAGGCATTTGCAGTTCCCGT
CATTTGCCGACCGGCTGGAATCAGCCGTGAAGGGTGTCATTGCAGAAGGCAAATACAGGA
CTAGGGATTTGGGCGGCACCAGCACCACCCAGGAAGTCACGGATGCAGTGATCGCTAAAC
TCGATTAGCCGCCAATTGCGTGCTTTTTGAGACTAGTTTTTTGTGCCCCTCGGACTAGTC
TGCTAGTCCTGAATGATTTTCATTGATTGTAGTGTTAGATTGTCTTTTTGTTCAGCGAAT
CACTGTAAATCTTGCGGCGTGTTCTATCTGGTTTGCTTCAGAATAATTTGAGCAACTCAC
CAGAAACTTGCCAAGTTATAACTGGAAATAAGTTCGGAATTATAAAGAAACGATCCTCTT
TTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_16233 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g38200.1	379	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g47680.1	372
Arabidopsis v10	AT4G35260.1	367	\| Symbols: IDH1, IDH-I \| isocitrate dehydrogenase 1 \| chr4:16774494-16776233 REVERSE LENGTH=367