barSeed - Barley Seed Development Database

Probe CUST_13368_PI390587928

Source Contig U35_16234

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13368_PI390587928	Hv_44K_v2	TGGCTACCTTAAATTTAATTGCAGAGAGAATAGCTGGCTACCTTAAATTTAAACCACATG	1434	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.585	2.674	1.323	0.758	0.292	0.386
Raw	1956.640	3187.831	1369.876	1266.656	164.881	240.348

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43486.2	1540	2e-24	1452 - 1511	100	60 / 60	plus	ABC06616 ABC06617
MLOC	MLOC_43486.1	1405	2e-24	1337 - 1396	100	60 / 60	plus	ABC06616 ABC06617
JLOC1	JLOC1_28116.2	1489	8e-25	1340 - 1399	100	60 / 60	plus
JLOC1	JLOC1_28116.1	1477	8e-25	1328 - 1387	100	60 / 60	plus
Harvest21	ABC06616	1018	3e-25	918 - 977	100	60 / 60	plus	ABC06616
Harvest35	U35_16234	1556	3e-25	1435 - 1494	100	60 / 60	plus

Contig Sequence (1556 bp)

>U35_16234 1556 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGTTTCGGTCTCGGAATCCTTCCTCCCTCCCCTCCCCTCCG
TGTCGCCCGCGCTCCGCCGGATCGCAATTCCGCATCCGCCCGCCGCAGCCCCAGCCTGCC
ACCCATGGCGCGGCGATCCGCACCGCTCCTCCGCCGCCTGGTCGCCTCCGCGCCGTCCCT
CCCTGGCCACGGCGGCGGCGCGCGCCGCACGGTGACCTACATGCCCCGGCCGGGCGACGG
CACCCCGCGCCCCGTCACGCTCATCCCGGGCGACGGCATCGGGCCCCTCGTCACAGGCGC
CGTGGAGCAGGTCATGGAGGCCATGCACGCGCCCGTCTACTTCGAGACATACGACGTCCA
CGGCGACATGCCCGCCGTGCCGCCCGCGGTCATCGAGTCCATCCGCCGCAACAAGGTCTG
CCTCAAGGGCGGCCTCGCCACCCCCGTCGGCGGGGGCGTCTCCTCCCTCAACATGCAGCT
CCGCAAGGAGCTCGACCTCTTCGCCTCCCTCGTCAACTGCGCCAACGTCCCCGGCCTGCC
CACCAGGCACAAGAACGTCGACATCGTCGTCATCAGGGAGAACACCGAGGGCGAGTACTC
GGGCCTCGAGCACGAGGTCGTCCCGGGGGTCGTCGAGAGCCTCAAGGTGATCACGAAGTT
TTGCTCTGAGAGGATTGCCAAATATGCCTTCGAGTATGCTTACCTTAACTACCGGAAGAA
AGTCACAGCAGTGCATAAAGCAAACATCATGAAACTTGCTGATGGTTTGTTCTTGGAGTC
TTGCCGTGAGATTGCCGCTAAATATCCAAGTATTGAGTATAACGAAATCATTGTTGACAA
CTGCTGCATGCAACTTGTTTCAAGGCCTGAGCAATTTGATGTTATGGTTACGCCTAACCT
TTACGGCAATTTGGTTGCCAACACAGCTGCAGGTCTTGTTGGAGGAACAGGTGTCATGCC
AGGAGGTAATGTGGGTCAGGATCATGCCATCTTCGAGCAAGGTGCTTCTGCAGGAAATGT
GGGAAACGACAATCTTGTAGAGCAGCAGAAAGCAAACCCTGTCGCCCTGCTCCTGTCGTC
CGCGATGATGTTGAGGCATTTGCAGTTCCCGTCATTCGCTGACCGTCTGGAAACTGCGGT
GAAGCGCGTCGTTGCAGAAGGCCAGTACAGAACAAAGGATCTAGGCGGCACCAGCACCAC
CCAGGAAGTTACTGATGCAGTGATCGCTAATCTGGATTAGATACCTGATGCACCGCTGAA
GGATCGATTCTTTTGGAGGACTGGTTTAAAAGTCCCAACTTCTGAGTGTTATTTTTTTCG
TACAGTGTTAGATCGTCAATTCTGTTTCAGAAATAATTGAGGAATCCACGAGAATTATTA
TTCTCACGAGACTTTGTAGCAAGGCAAACCACCTTGTGTTGCAGAGAGAATAGCTGGCTA
CCTTAAATTTAATTGCAGAGAGAATAGCTGGCTACCTTAAATTTAAACCACATGCATTGG
AAGTTTAAAAAAAAAAAAAAAAAGTTTATTTTCAGTTCTAATTCATGGTTATCACT

Homology of Contig U35_16234 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g38200.1	379	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi5g13490.1	372
Arabidopsis v10	AT4G35260.1	367	\| Symbols: IDH1, IDH-I \| isocitrate dehydrogenase 1 \| chr4:16774494-16776233 REVERSE LENGTH=367