barSeed - Barley Seed Development Database

Probe CUST_13348_PI390587928

Source Contig U35_28211

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13348_PI390587928	Hv_44K_v2	GTTGGAGCCGCGGAACCTACTATTATAATGTATACGTATCTCTACAACTTCGCCAAGAAG	391	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12009.1	2646	3e-21	1931 - 1990	97	58 / 60	minus	ABC14139 ABC21126
JLOC1	JLOC1_8015.2	2889	2e-21	612 - 671	97	58 / 60	plus
JLOC1	JLOC1_8015.1	2877	2e-21	600 - 659	97	58 / 60	plus
Harvest21	ABC26948	451	3e-25	392 - 451	100	60 / 60	plus
Harvest35	U35_28211	451	3e-25	392 - 451	100	60 / 60	plus

Contig Sequence (451 bp)

>U35_28211 451 Hv_44K_v2
ACCACAACACCTGCTTCCACCGCCGCGCCGAGGAGCCACCCGGCCGCGCACCGCACCGCT
TCCTTCCTCCTCCTTGCCCCGCCGCCCGTTCGGATCACCGGTACGTACGCTGCTCATGGA
TCTACTGAGGAACCCCTTCAAGGGAGTGGTCGCAGATGTCAAAGGGAGAGCGCCTTGGTA
CAAGGACGACTGGCTTGCAGGGCTCCGAGCTGGCTTCGGGATATTGGCACCTACCATGTA
CATATTCTTTGCCTCCGCGCTCCCTGTCATCGCCTTCGGAGAGCAGCTCAGCAACGAAAC
AAATGGTATTCTCAGCACAGTTGAAACCTTGGCATCTACTGCAATATGCGGGATAATACA
TGCGATTCTTGGAGGGCAGCCGATGATGATCGTTGGAGCCGCGGAACCTACTATTATAAT
GTATACGTATCTCTACAACTTCGCCAAGAAG

Homology of Contig U35_28211 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08020.1	673	1e-58	protein\|boron transporter protein, putative, expressed
Brachypodium v1_2	Bradi2g04690.2	525	4e-65
Arabidopsis v10	AT1G15460.1	683	6e-51	\| Symbols: ATBOR4, BOR4 \| HCO3- transporter family \| chr1:5310196-5313376 REVERSE LENGTH=683