barSeed - Barley Seed Development Database

Probe CUST_13347_PI390587928

Source Contig U35_397

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13347_PI390587928	Hv_44K_v2	GGTTGGTTCCTCAACTGTTTTGCTGAAATTGTTACAGAATCAAATGTGTTTTTAAGCCAA	1905	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375145	2555	2e-23	2493 - 2550	100	58 / 58	plus	ABC02143 ABC02148 ABC45008 ABC49823
MLOC	MLOC_5287.1	2319	2e-23	23 - 80	100	58 / 58	minus	ABC02143 ABC02148 ABC49823
JLOC1	JLOC1_3395.1	2525	1e-23	2225 - 2282	100	58 / 58	plus
Harvest21	ABC02143	269	4e-24	175 - 232	100	58 / 58	plus	ABC02143
Harvest21	ABC39092	514	2e-22	19 - 76	98	57 / 58	minus
Harvest21	ABC02144	1964	2e-22	1891 - 1945	100	55 / 55	plus
Harvest35	U35_397	1981	3e-25	1906 - 1965	100	60 / 60	plus
Harvest35	U35_517	532	2e-22	461 - 515	100	55 / 55	plus

Contig Sequence (1981 bp)

>U35_397 1981 Hv_44K_v2
ATACAACTCGTGGGCAGCAGCTTCTTCTCTGCATACCAAGAAGTCGCCTCCGTTGCTTTC
CTCCAGCAGTGCGCGCCCCTCCTCTCCTCTCGAGATCTTCTCCGAGTTGCTGAGATCTGG
TTGTAAGCAGCCAAGATGGTGAAGATCTGCTGCATCGGTGCTGGCTACGTCGGCGGCCCG
ACAATGGCTGTCATTGCCATCAAGTGCCCAGCAATTGAGGTGGTGGTCGTCGACATCTCC
AAGCCCCGCATTGACGCCTGGAACAGCGACACCCTCCCGATCTACGAGCCTGGCCTCGAT
GATGTTGTCAAGGCCTGCAGGGGCAAGAACCTCTTCTTCAGCACTGATGTTGAGAAGCAT
GTCGCCGAGGCCGACATCATCTTCGTCTCCGTCAACACCCCCACCAAGACCCGTGGTCTG
GGAGCCGGCAAGGCTGCCGACCTCACCTACTGGGAGAGCGCCGCCCGGATGATCGCCGAT
GTGTCCAAGTCGGACAAGATCGTCGTCGAGAAGTCCACCGTCCCCGTCAAGACCGCAGAG
GCCATTGAGAAGATCCTGACCCACAACAGCAAGGGCATCAACTACCAGATCCTGTCCAAC
CCGGAGTTCCTCGCCGAGGGCACTGCGATCGACGACCTGTTCAAGCCCGACAGAGTGCTC
ATCGGTGGCCGGGAGACCCCCGAGGGCAGGAAGGCCGTCGAGGCTCTCAAGTCGGTGTAC
GCCCACTGGGTGCCCGAGGAGAACATCATCACCACCAACCTGTGGTCTGCCGAGCTCTCC
AAGCTCGCCGCCAACGCCTTCCTGGCCCAGAGGATCTCGTCCGTGAACGCCATGTCGGCG
CTGTGCGAGGCCACGGGCGCCAACGTGTCGGAGGTGTCGTACGCCATCGGCAAGGACTCG
AGGATCGGTCCCAAGTTCCTGAACGCCAGCGTCGGGTTCGGCGGGTCGTGCTTCCAGAAG
GACATCCTGAACCTGGTGTACATCTGCGAGTGCAACGGCCTGCCGGAGGTGGCCAACTAC
TGGAAGCAGGTGATCAAGATCAACGACTACCAGAAGAGCCGGTTCGTGAACCGCGTGGTG
TCGTCCATGTTCAACACCGTGTCCGGCAAGAAGATCGCCGTGCTCGGGTTCGCCTTCAAG
AAGGATACCGGCGACACCCGGGAGACCCCGGCCATCGACGTGTGCAAGGGCCTGCTGGGC
GACAAGGCCCAGGTGAGCATCTACGACCCGCAGGTGACGGAGGACCAGATCCAGCGCGAC
CTGGCCATGAACAAGTTCGACTGGGACCACCCGATGCACCTGCAGCCGACGAGCCCCACG
GCCGTGAAGCAGGTGAGCGTGGTGTGGGACGCGTACGAGGCCACCAAGGGCGCCCACGCC
GTGTGCATCCTCACCGAGTGGAACGAGTTCAAGTCGCTGGACTACAAGAAGATCTTCGAC
AACATGCAGAAGCCGGCCTTCGTCTTCGACGGCCGCAACGTCGTCGACGCCGAGAAGCTC
AGGGAGATCGGCTTCATCGTCTACTCCATCGGCAAGCCGCTCGACGGGTGGCTCAAGGAC
ATGCCCGCCGTCGCCTAATTCGCTCTCCACGTCGGCCGGCCTCGTCTGTCTGCCGGCGGC
GTCGTCGATCGGGGCTGCAGGAAGGCAGGGGAAGGAAGGAAGGAAGGAAGGAAGATGAGC
CGGTGGTTTGAGTTTGACCATATCCATTCTTTATAGTTTGCGTTTTGCAGGAGAAGCATC
AACAACAGTTCCTCGCCCGGGCATAAAAATTTAGTAAACCTTCGTGTCTTGTTAAGTTTT
CGATCGATACATGTTTGCGTCTGTAGATCTTATAATCAAACTCCTCGGCCCCCTGTGCTG
TCCGAGGAGGTTTTTTCCCCTTTGTATCCGATGAACTTTGTAGCCGGTTGGTTCCTCAAC
TGTTTTGCTGAAATTGTTACAGAATCAAATGTGTTTTTAAGCCAAAAAAAAAAAAAAAAA
A

Homology of Contig U35_397 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g25690.1	481	protein\|UDP-glucose 6-dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi1g08120.1	481
Arabidopsis v10	AT5G15490.1	480	UDP-glucose 6-dehydrogenase family protein \| chr5:5027872-5029314 REVERSE LENGTH=480