barSeed - Barley Seed Development Database

Probe CUST_13345_PI390587928

Source Contig U35_42505

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13345_PI390587928	Hv_44K_v2	CAGTTTTTGCCAAAAGATCGGAAAAATTGTATTTGTACCTGCAGAAAAAGGCTTCCCAAG	614	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14650.2	13289	7e-23	10837 - 10896	98	59 / 60	plus	ABC18043
MLOC	MLOC_14650.3	13266	7e-23	10814 - 10873	98	59 / 60	plus	ABC18043
MLOC	MLOC_14650.1	13813	7e-23	11285 - 11344	98	59 / 60	plus	ABC18043
JLOC1	JLOC1_10003.3	13280	4e-23	10771 - 10830	98	59 / 60	plus
JLOC1	JLOC1_10003.2	13405	4e-23	10896 - 10955	98	59 / 60	plus
JLOC1	JLOC1_10003.1	13541	4e-23	11032 - 11091	98	59 / 60	plus
Harvest21	ABC38201	674	3e-25	615 - 674	100	60 / 60	plus
Harvest35	U35_42505	674	3e-25	615 - 674	100	60 / 60	plus

Contig Sequence (674 bp)

>U35_42505 674 Hv_44K_v2
GCAGCATTCTTTCACCCCAGTGATTCCCGGTGTTTTTCTAGCTCAGATAATGCAAATTTG
TTTCTTCAGGCTTTGGGGGTTGAACAATTAAATGATCAAGAAATACTAGTGAGGTTTGCT
TTGCCTGGCTTTGGGAACAAAACAGTTCAAGAGCAGGAAGACATTTTAGCTTACTTGTAT
GCTAACTGGAAAGATCTGCAACTTAATTCAGCTGTAGTAAATACCTTGAGGGAGACTAAT
TTTGTGACAAATGCAAATGAGTTTTGTACAGAGCTGTTCAAACCAAACGAACTACTTGAC
CCTTCAGATGCTTTGCTGGCTTCAGTATTTTCTGGGGAGAGAAATAAGTTCCCTGGCAAA
AGGTTCATGTCAGATGGTTGGCTTGGTATACTCAGAAAAGTGGGTCTTCGGATATCTACA
GAGGCTGATATGATAGTACAGTGTGCTACGAAAATAGAAACAATGGGAAATGATGTGATG
TCATCTTTAGAGAAACATGATGACTTTGATGCAGACTTGTCAGACAGAAAAAATGAAATT
CCTTTTGAGTTATGGTCATTGGCAGAATCTGTTGTAAATGTGATTTTGGCAAATTTTGCT
ACTTTGTATGATAGCAGTTTTTGCCAAAAGATCGGAAAAATTGTATTTGTACCTGCAGAA
AAAGGCTTCCCAAG

Homology of Contig U35_42505 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi5g26017.1	4755	2e-128
Arabidopsis v10	AT5G23110.1	4706	1e-63	Zinc finger, C3HC4 type (RING finger) family protein \| chr5:7758307-7775509 FORWARD LENGTH=4706