- Probe CUST_13337_PI390587928
- Source Contig U35_42509
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13337_PI390587928 | Hv_44K_v2 | ATTGTGATGAACCTCTTAGCCTAATTATTGTTTCTTCTGACTAGCTACCGGTGGCGCTGG | 263 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK366474 | 3001 | 2e-24 | 2631 - 2690 | 100 | 60 / 60 | plus | ABC07248 ABC38206 |
| MLOC | MLOC_79705.2 | 1247 | 2e-24 | 1167 - 1226 | 100 | 60 / 60 | plus | ABC07248 ABC38206 |
| MLOC | MLOC_79705.1 | 1268 | 2e-24 | 1179 - 1238 | 100 | 60 / 60 | plus | ABC07248 ABC38206 |
| MLOC | MLOC_79706.2 | 2559 | 2e-24 | 2470 - 2529 | 100 | 60 / 60 | plus | ABC07248 ABC38206 |
| MLOC | MLOC_9685.1 | 230 | 7e-23 | 106 - 165 | 98 | 59 / 60 | plus | ABC07248 ABC38206 |
| JLOC1 | JLOC1_53076.30 | 1249 | 8e-25 | 1159 - 1218 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53076.26 | 1629 | 8e-25 | 1539 - 1598 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53076.25 | 1235 | 8e-25 | 1145 - 1204 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53076.23 | 1135 | 8e-25 | 1045 - 1104 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53076.21 | 1490 | 8e-25 | 1400 - 1459 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53076.17 | 1667 | 8e-25 | 1577 - 1636 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53076.12 | 1908 | 8e-25 | 1818 - 1877 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53076.10 | 1261 | 8e-25 | 1171 - 1230 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53076.7 | 1734 | 8e-25 | 1644 - 1703 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53076.6 | 1957 | 8e-25 | 1867 - 1926 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53076.4 | 1278 | 8e-25 | 1188 - 1247 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53076.3 | 2128 | 8e-25 | 2038 - 2097 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53076.1 | 1160 | 8e-25 | 1070 - 1129 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC38206 | 560 | 3e-25 | 264 - 323 | 100 | 60 / 60 | minus | ABC38206 |
| Harvest21 | ABC07248 | 607 | 3e-25 | 49 - 108 | 100 | 60 / 60 | plus | ABC07248 |
| Harvest35 | U35_42509 | 560 | 3e-25 | 264 - 323 | 100 | 60 / 60 | minus |
Contig Sequence (560 bp)
>U35_42509 560 Hv_44K_v2 TTTTTTTTTTTTTTTTTAATCCATAAATCATATATATAACATTCATAATCCATGTCATAA TATTTGGAATTACTACATATATATACATCATATATATAATCCATGTCATAATATTTGGCA TTACTACATAAAATTTGGCATTACGATAAATGTCTTCATGTCAATATCGTAGTCCAAAGA ACATCCGTATGACAACCTGCAACACCCATGTTGGGTTGTACGTGATGGTCAAAGGAGTTG TGCGACAAAGTAGGCGACCACATCCAGCGCCACCGGTAGCTAGTCAGAAGAAACAATAAT TAGGCTAAGAGGTTCATCACAATTACTCATTTTCGTATCAGTAAATTAGATAAACACCAT ATGGCAAAAAGACAAGTTAATGATCATTAAAGTCCGGTAAATACACTATCGGAACAGGTC ATTGATTTGCATGAATTTTGGGACTGAGAAGAACCAGGAAGCGCAACTTTGCTACAGGAT GGCAAACACATGAGAAATTAGGCAAACTACTAGTCTTCTTCTTCTTGTGGTTTTCTAGTA TTTGCGGGGTGAGTTCTTGT
Homology of Contig U35_42509 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |