barSeed - Barley Seed Development Database

Probe CUST_13336_PI390587928

Source Contig U35_28218

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13336_PI390587928	Hv_44K_v2	AATTTCTGGAAACTTGTATGGTTCTTAGTTCTAGGTTACCTCGGGCGAGCAGCAAGCAAG	23	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66247.3	1381	2e-24	470 - 529	100	60 / 60	minus	ABC03873
MLOC	MLOC_66247.2	1459	2e-24	470 - 529	100	60 / 60	minus	ABC03873
MLOC	MLOC_66248.2	1360	2e-24	415 - 474	100	60 / 60	minus	ABC03873
MLOC	MLOC_66248.3	1442	2e-24	415 - 474	100	60 / 60	minus	ABC03873
JLOC1	JLOC1_43636.5	2199	8e-25	366 - 425	100	60 / 60	minus
JLOC1	JLOC1_43636.1	2673	8e-25	415 - 474	100	60 / 60	minus
Harvest21	ABC26956	366	3e-25	24 - 83	100	60 / 60	minus
Harvest35	U35_28218	366	3e-25	24 - 83	100	60 / 60	minus

Contig Sequence (366 bp)

>U35_28218 366 Hv_44K_v2
GGCGACGTGGCCACCGGGGTCAGCTTGCTTGCTGCTCGCCCGAGGTAACCTAGAACTAAG
AACCATACAAGTTTCCAGAAATTCGTGCTTCCACTGGACGACGCGATTGATATATACGCT
CCCCTCGCAAGTCCGTTCCTAGGTGTGCTAGTTTGTCGACTGAAAACTGTGCAGCAAATG
AGCCCACGCTTTTTTTTTTTTCTGGGCCTGGTCGGTCTTTGGGGTTGCAGGGTTTGATTC
CCGTTGCTCTGCTCCAATGATCATGGGGCACAAGCTCAAAATTCTGAGCGCTTAAACTGC
ATCCTTTTTTTTGCTCTAGTTAGTCCTGCCCATTTTACTGGGGCTAGGAATAAAATTAAT
AGGGAT

Homology of Contig U35_28218 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None