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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13333_PI390587928Hv_44K_v2TTGGCTTCCCGGCCAGGAAGAAGGTGAAGGACGAGTGCTCCGAGATGCCATTCGAGGACC436GeneList: mediumpurple3
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 3.9172.7891.1180.6510.1650.166
Raw 330.132359.219123.928115.06510.68911.276



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK251136.19892e-24476 - 53510060 / 60plus ABC00120 ABC00610 ABC00897
MLOCMLOC_23029.47402e-24131 - 19010060 / 60plus ABC00120 ABC00610 ABC00897
MLOCMLOC_23029.315052e-241004 - 106310060 / 60plus ABC00120 ABC00610 ABC00897
MLOCMLOC_23029.213912e-24956 - 101510060 / 60plus ABC00120 ABC00610 ABC00897
JLOC1JLOC1_15926.114518e-25926 - 98510060 / 60plus
Harvest21ABC304874963e-25437 - 49610060 / 60plus
Harvest21ABC001209873e-25450 - 50910060 / 60plusABC00120
Harvest35U35_305314963e-25437 - 49610060 / 60plus
Harvest35U35_349873e-25450 - 50910060 / 60plus



Contig Sequence (496 bp)

>U35_30531 496 Hv_44K_v2
TCTAACTATCCTCCCCCACCCTCCACCAAGTTTCGTCTCTTTCATCCACACCTCCTCCTG
CTCGAGATGGACCCCGTCGAGCGCCTCAAGACCGAGGTCTACGACCAGAAGCCGGATCTC
TTCGAGCCCCTCAAGGCCCACCAGTCACCCAAGTACATGGTGTTCGCGTGCGCCGACTCA
CGCGTGTGCCCGTCGGTGACCCTGGGCCTGGAGCCCGGCGAGGCCTTCATGGTCCGCAAC
ATCGCTGCCATGGTCCCTTGCTACTGCAAGAACAAGCACACCGGCGTCGGGTCGGCCATC
GAGTACGCCGTCTGCGCCCTCAAGGTCGAGGTCATCGTGGTGATCGGCCACAGCCGGTGC
GGCGGGATCAAGGCCCTGCTCAACCTCAAGGATGGCGCCGACGACACATTCCACTTCGTC
GAGGACTGGGTCAGGATTGGCTTCCCGGCCAGGAAGAAGGTGAAGGACGAGTGCTCCGAG
ATGCCATTCGAGGACC



Homology of Contig U35_30531 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g45274.42037e-79protein|carbonic anhydrase, chloroplast precursor, putative, expressed
Brachypodium v1_2Bradi2g44856.12034e-86
Arabidopsis v10None