barSeed - Barley Seed Development Database

Probe CUST_13330_PI390587928

Source Contig U35_16240

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13330_PI390587928	Hv_44K_v2	GTGACAATCCATATATGTAATCTGGTATGTATGATGAATTCGTATTAAGATGTCTCCCGG	963	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365914	1059	2e-24	977 - 1036	100	60 / 60	plus	ABC10964
MLOC	MLOC_74259.1	1143	2e-24	260 - 319	100	60 / 60	minus	ABC10964
JLOC1	JLOC1_49480.1	1007	8e-25	221 - 280	100	60 / 60	minus
Harvest21	ABC10964	1040	1e-23	964 - 1023	98	59 / 60	plus	ABC10964
Harvest35	U35_16240	1056	3e-25	964 - 1023	100	60 / 60	plus

Contig Sequence (1056 bp)

>U35_16240 1056 Hv_44K_v2
GGCTCTCGGCTCGCCACGACGCCCGCATGCCGCCGCCCCGCCGCGCCGGCGCGGGCGACA
CGAGCGCCTTCTTCGCGGCGACGCTGGTGCTGTGGGCCGTGTCGGTGGGGTTCGAGATCG
GCGCGCGGGGCCGCCGCGAGCTGGCCGCCGTGGCCGCCGGCTTCGCCTTCTTCCAGGCCG
CCAACACCGCCGTCCGCGCCGCGGTCTCCCGCGACCCGCTCTTCGTCAACACCGCCGTCT
CTCTGCTCCACTCCTCCCTCACCTCCGCCTCAGTTATCTTTGTTCTGTTGTGCCAATGGC
GCACCAAGGGCCTTGAGAACATGTTTCAGCATGAAGAATTAGTTGGTAGCAGTTGGATTG
GAGCATATTCTGCTCTGTGCTTTTCATGTGGCTACTTTGCTTATGACCAATTGGATATGC
TCCGCTACCGGCTATACAGTGGATGGATTCCTGGGATTCTGATGCATCACCTTATTCTGC
TCATTTGCTTTACGCTAGCTCTGTATCGGAATGTGACAATCAACTACCTAATTCTCACTC
TTCTATGCGAGATGCACTCCATATTCTTGCATGTAAGGAAATTGAGGAGAATGGCTGGAT
TCCGCGATTTCAACAGAAAACTGGTGAAACTGGAATGGGTACTCAACTGGACTACCTTTG
TCACAGCAAGGGTGATCTGCCACATATTGATCACATACAGACTGATCACCGACGCACACA
AGTTTGATAAGGGCATTGAGCTGCCACTAGCCCTTTCTGGTATGGCAGGAATGAATGTGC
TCAATGTATCTTTAGGGCTTGACCTATTTAAAGCGTTCGCGCGAGAGAGAAATCAGCAGA
CGCATCAGGACTGAATGTGTCTTTTCTTGATAGTGTAATGTAAATTTTGGCAAGGTTATA
GTCACACCAGTGTAAATCAGAAGACAGAGGTATGTTCTAAGTGTTGTTAGCCTCTAGACT
GTAGTGACAATCCATATATGTAATCTGGTATGTATGATGAATTCGTATTAAGATGTCTCC
CGGAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_16240 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g64930.1	315	6e-159	protein\|expressed protein
Brachypodium v1_2	Bradi2g56250.1	277	1e-173
Arabidopsis v10	AT1G21790.1	288	6e-125	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein \| chr1:7654357-7655691 FORWARD LENGTH=288