barSeed - Barley Seed Development Database

Probe CUST_13327_PI390587928

Source Contig U35_30535

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13327_PI390587928	Hv_44K_v2	GAAGTGGCTGAAGGAGGGCTTTGCTAAGAGCAAGAAAGAGTTTTCCCGTGAAATCAAGAA	617	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.309	0.969	2.022	2.086	0.958	0.762
Raw	5.317	27.023	52.864	84.554	14.400	11.846

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17680.1	4715	2e-24	3513 - 3572	100	60 / 60	plus	ABC20819
JLOC1	JLOC1_12210.1	4270	8e-25	3003 - 3062	100	60 / 60	plus
Harvest21	ABC30493	715	3e-25	618 - 677	100	60 / 60	plus
Harvest35	U35_30535	715	3e-25	618 - 677	100	60 / 60	plus

Contig Sequence (715 bp)

>U35_30535 715 Hv_44K_v2
GACGATCTTGTAGAGTTCAATGTATCCTACAACAATTTGTCTGGCCCCGTTCCGGGCATT
TTGCTGAAATTTCCTGATTCATCTTTCCATCCAGGGAATGAACTACTCGTTCTTCCCCTT
TCTGGGTCACCAAATAGTCCTGAAGGATCAGGTGGGAGGAAACATGGTATGAAGCGTGGA
ATTCTGTATGCATTGATTGCATGTGTTATTGTCTTTGTTACCGGAATCATTGTCCTTTTA
CTTGTCCATTGGAAGATCTCTAACTGGAAGAGTAGCGAAAAAGAGTATGGGGGCGTTTCC
GTGCCTTGTGGTGGCCTGGAAGGACAGCATGAAACACAATGTGTGGATCAGCCAACCGGT
AGCATTTCCAGCCTTAAAGATAGCACAGCGTCTTCGATGCCTTCATTGATATCATCACCG
TCTGATGTGCGCTCGCACCACCACTCCATCTTGAGAGTGCACTCTCCTGACAAACTGGTT
GGGGACTTGCATCTTTTCGACATTTCTGTGTTGTTTACGGCTGAAGAGCTCTCTCGTGCT
CCGGCAGAGATCATCGGCAGGAGCTGTCACGGGACATCCTACAAGGCTACTCTTGACAAT
GGTTATGTGCTGACAGTGAAGTGGCTGAAGGAGGGCTTTGCTAAGAGCAAGAAAGAGTTT
TCCCGTGAAATCAAGAAGCTCGGCAGCGTCAACATCCCAGTCTAGTGTCCCTGCG

Homology of Contig U35_30535 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g20450.1	1042	3e-92	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None