barSeed - Barley Seed Development Database

Probe CUST_13317_PI390587928

Source Contig U35_16247

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13317_PI390587928	Hv_44K_v2	GGGTCAAAACATGGCTTCTTCAAATTGGTTATGCTCAGCAAAATCTTGAAATCCTAAAAA	1411	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.627	1.569	1.213	0.779	0.319	0.299
Raw	2416.520	3615.410	2477.800	2455.601	357.440	365.779

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC04886	1483	2e-22	1414 - 1471	98	57 / 58	plus	ABC04886
Harvest35	U35_16247	1531	3e-25	1412 - 1471	100	60 / 60	plus

Contig Sequence (1531 bp)

>U35_16247 1531 Hv_44K_v2
GCACGAGGCCTAAAAACCCACGCCAAAGGACAACAGCGCAAAACCCCACCACGGACCCTC
GCCGTCGCTGTCTCCCATCTGGCCGGCGCTAGCTAGGGCACCGGTCGCCCTCCCCCTCCC
CCTCCCCCTCCGACGATGTCGACGCCCTCTGATCCAGCGGCGTCCGCCCAGCCCCCCTCC
ACCGCGGCCACCTCCAGCAGCGGCCTCACCTTCAAGCTCCACCCCCTCGTCATCGTGAAC
GTCTCCGACCACTACACCCGCGTCAAGGCCCAGGCCTCCTTCCCCGCCGAGACCCCGTCG
CCGGGAAAGGCCCAGGCCTCCTGCTCCGCCGAAGGCTCCTCGGCGCCCGCGGAGCCGCCG
AGGGTCTTCGGGTGCGTGATCGGGGTGCAGCGCGGGCGGACGGTCGAGATCTTCAACAGC
TTCGAGCTCGTCCTCGACCCCGTCACCGGCACGCTCGAGCGCGCCTTCCTGGAGAAGAAG
CTTGAGCTCTATAAGAAGGTGTTCCCTGAATTCTATGTGCTGGGCTGGTACTCAACTGGA
AGCGATGTGCAGGATACTGACATCCTAATGCACAAGGCTCTGATGGACATTAATGAAAGC
CCTGTCTATCTTCTCTTGAATCCTGCAATCAACCACTCCCAGAAGGATCTCCCTGTAACA
ATTTATGAGAGTGAGTTGCATGTTATCGATGGGGGTCCACAGCTCATCTTTGTCAAATCA
AATTACACAATTGAGACTGTAGAAGCAGAGAGGATATCTGTAGATCATGTTGCCCATCTA
AAACCATCTGACGGTGGCTCTGCAGCAACTCAATTGGCTGCTCATCTTACAGGAATACAC
AGTGCCATCAAGATGCTCAATAGCAGGGTTCGTGTTATCCAGCAATACCTTGGTGCCATG
CAAAAGGGTGATATTCCACTGGATAATTCACTTCTTAGGCAAGTCTCAAGCCTCGTAAGA
AGACTGCCAGCTATGGAATCGGAGAAATTCCAAGATGATTTCTTAACGGAATACAACGAC
ACCCTCCTCATGACTTACCTTGCAATGTTCACGAACTGTTCAAGCACAATGAACGAGTTG
GTCGAGAAGTTTAACACCACGTATGAGAGATCCCCTGCCAGGAGAGGAGGCCGAGGTGCT
TTCATGTAGATCGGTTCCAACCGTCCTGCTGCAGCTGAGGTTTTGGTGCTGGTTATCCGT
GCTGAGATTTTGAAAATAGTTCCCATATCTAGACGCAATTTTTTGCGTGCAATCAGTTAG
GTCCGGCAGTATCTGAGACTTTTCAATCTTCTTATCCTCTCTGGGTTGGATTAATGACTC
GACGTGCCTGGGTTGATTGATTATCCCTCTTGTCCCGAAGTTGACATGTAAAGTTCGACT
TAATAGATGTTGCTCAAGTTAACTCGTATCTGGGTCAAAACATGGCTTCTTCAAATTGGT
TATGCTCAGCAAAATCTTGAAATCCTAAAAAAAAAAAAAAAAAATCCTCAAGCTGTGTCA
TTATTATTTTGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16247 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39070.1	330	1e-177	protein\|COP9 signalosome complex subunit 6a, putative, expressed
Brachypodium v1_2	Bradi3g39500.1	328	0.0
Arabidopsis v10	AT5G56280.1	317	2e-156	\| Symbols: CSN6A \| COP9 signalosome subunit 6A \| chr5:22783617-22785530 REVERSE LENGTH=317