barSeed - Barley Seed Development Database

Probe CUST_13315_PI390587928

Source Contig U35_16248

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13315_PI390587928	Hv_44K_v2	ATGATGATGATTATAGTTTCAGATATAAGTCTTGTAAGTACGTGGCCCCAACGATGATTG	1418	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.569	0.510	0.698	2.069	1.562	2.395
Raw	91.457	124.507	164.417	736.537	202.144	328.222

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357812	1529	2e-24	1424 - 1483	100	60 / 60	plus	ABC12191
MLOC	MLOC_78725.2	1682	2e-24	29 - 88	100	60 / 60	minus	ABC12191
MLOC	MLOC_78725.1	2754	2e-24	275 - 334	100	60 / 60	minus	ABC12191
JLOC1	JLOC1_52466.2	1880	8e-25	1665 - 1724	100	60 / 60	plus
JLOC1	JLOC1_52466.1	2630	8e-25	2415 - 2474	100	60 / 60	plus
Harvest21	ABC12192	335	3e-25	59 - 118	100	60 / 60	minus
Harvest21	ABC12191	554	3e-25	60 - 119	100	60 / 60	minus	ABC12191
Harvest35	U35_48830	493	3e-25	64 - 123	100	60 / 60	minus
Harvest35	U35_16248	1599	3e-25	1419 - 1478	100	60 / 60	plus

Contig Sequence (1599 bp)

>U35_16248 1599 Hv_44K_v2
GTGGTACCACTCCACTCACCACTGCCACGCCACTGCTACGACTCCAAGTCGTAAAGGAAC
TTGGAGAGGCTGCGTGGAAGGGCCGGGAAACTATACTATAGTACTGCTGCTACACTAAGC
TCGCGATTAATGGCAGCTGCCTTGACGAGGAGAGCGGCGGCCGTGGCCGCGGTGCTGGCC
ACCGTCACCTCGCTCCTCGCCCCCGGCGCGGTGGCGCAGCTCTCGCCGTCGTTCTACAGC
GGCAGCTGCTCGAGCCTGGAGTCCATAGTGAGGTCGGGGATGGTGTCCGCCGTCCAGCAG
GAGCCTCGGATGGGCGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCAACGGC
TGCGACGGCTCGGTGCTGCTGGACGACTCGTCGACGCTGACGGGGGAGAAGAACGCCGGG
CCTAACGCCAACTCGCTGCGCGGCTTCGAGGTGATCGACGCCATCAAGTCCCGGGTCGAC
GCCGCTTGTCCTGGCACCGTGTCCTGCGCCGACATCCTCGCCGTCGCCGCGCGCGACGGC
GTCAACCTGCTGGGCGGGCCGTCGTGGGGGGTGCCGCTGGGCCGGCGGGACGCGCGCACG
ACGACTCAGGCAGCGGCGAACAGCAACCTGCCGTCTCCGTCGTCGAGCGCGGCGACGCTG
ATCTCGGCGTTCGCGTCCAAGGGTCTGGACTCCCGCGACATGGTGGCGCTGTCGGGCGCG
CACACGATCGGCGCGGCGCGGTGCGCGAGCTTCCGGTCGCGCGTGTACAACGACAGCAAC
ATCAACGCCGGGTTCGCGACGCGGCGACGGCAGGTGTGCCCGGCGCAGGGCGGCGTGGGC
GACGGCAACCTGGCTCCGCTGGACGCCTTCAGCTCTGTGCGCTTCGACAACGGCTACTTC
CGCAACCTGCTGAGCCGCTTCGGCCTCCTCCACTCGGACCAGGAGCTCTTCAACGGCGGG
CCCGTCGACTCCATCGCGCAGCAGTACGCCGGCAACGGCGGCGCATTCTCCGCCGACTTC
ATCACCGCCATGATCAAGATGGGCAACATCAGTCCGCTCACCGGATCCAACGGCGAGATC
CGCAACAACTGCCGGAAACCCAACTAATAAACTACCACGAACGAACGAACTCCTCGAGAT
TCGTCGTAGCATTAGGCGGGAGGGTACGGTGTACGTACGTTGCTTTTTTTTTTTCTTTCT
GGTGGGGAGTGCGTGTGAAGGAAGGAAGGAAAGGGAAGGGCAACGACATGATTTGGTGGA
GCGGCGCTGTCAGGTGAGGGGACGAACGGGACCGGGGCTCGTGCATGTCTTTTTTTCCTT
CTCGTCAAGTTTTGATTGCTCACCACGGAGGCCGGCGGCGACACATCACGGCGTCGGCAT
TGCTTTGGTAAACTGCGCGGATTCTTTATCTGTACCATATGATGATGATTATAGTTTCAG
ATATAAGTCTTGTAAGTACGTGGCCCCAACGATGATTGTTTTGCAAGGAAAGAAATGAAT
AAGAGACGACACTTTATTCAAAAAAAAAAAAAAAAAATTTATTCATGTCATGTGGTGTGT
TTCATCAAGGTTGTACTATCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16248 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g14160.1	322	1e-158	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g09080.1	323	4e-165
Arabidopsis v10	AT5G05340.1	324	3e-116	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324