barSeed - Barley Seed Development Database

Probe CUST_13313_PI390587928

Source Contig U35_42512

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13313_PI390587928	Hv_44K_v2	ACTTGAGAACAAGAATTACGCTGCTGTCATAGCAAGCTTGGAAATCTTCCAGCAGCAAGC	518	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61771.2	6038	2e-24	2526 - 2585	100	60 / 60	minus	None
MLOC	MLOC_61771.1	6317	2e-24	2768 - 2827	100	60 / 60	minus	None
JLOC1	JLOC1_40381.1	6036	8e-25	3372 - 3431	100	60 / 60	plus
Harvest21	ABC38212	646	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_42512	646	3e-25	519 - 578	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_42512 646 Hv_44K_v2
AAAGAACTCCGTGACTCTAATGATGCTAGGGAGTCTTTAATGCTCAAGTTAAACTCTGCA
CTGGACCAATCAAAAAGTTTGAAAGAAAGTGAATCAGGATACATTTTCAAGTGTGATGAT
CTTACAGTGAAGAACCAAATATTAGAAGCAAAGCTCAAAGATATTTCAGTTGAAAATGCT
TTACTTATGGAAAGGCTCGTGGTATCTGAAACACTTGTTGAGGAACATAAAACTTGTGAA
AGCAAGTACAATGCCTGCACTGAAGAAAGGAAGAGATTTGAGAACCTTTTAATGAAAGAA
AGTCAGCTAACTAGTCAGCTCAAGGATGAGCTCAGATCAGTAATGGAAGATTTTGAGGGA
GTGAAAGATGAATTACGTAAGCAGTCCTCCTTAATCAGTGAACAGCAAATTGTTTCTACA
TCACTTCAAGAGCAACTGAGCATCCTATGCTCTAAACTTATTTCTTTGAGCAAGGACATC
GACATTCCATGCTTGGATGACGTATCTTTGCTACATGAACTTGAGAACAAGAATTACGCT
GCTGTCATAGCAAGCTTGGAAATCTTCCAGCAGCAAGCATGCCAGAAGGTGCTTCATCTC
CATCACGAAAAGGAGGCATTGGAAGAAATGTGCGATGTTCTCCGGA

Homology of Contig U35_42512 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g21940.1	1961	3e-75	protein\|expressed protein
Brachypodium v1_2	Bradi3g03290.1	1903	9e-82
Arabidopsis v10	None