barSeed - Barley Seed Development Database

Probe CUST_13311_PI390587928

Source Contig U35_28220

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13311_PI390587928	Hv_44K_v2	TGGTTGAGGAGTCAGACATCACCAACCTACCTTACCTGCAGTGCGTTGTCAAGGAGACCC	405	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.134	0.704	1.490	2.056	0.888	0.878
Raw	3.560	45.029	77.164	171.881	26.421	28.010

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360752	1822	2e-24	1193 - 1252	100	60 / 60	plus	ABC24721 ABC24749 ABC25202
MLOC	MLOC_75857.1	1826	2e-24	835 - 894	100	60 / 60	plus	ABC24721 ABC24749 ABC25202
MLOC	MLOC_75857.2	1429	2e-24	713 - 772	100	60 / 60	plus	ABC24721 ABC24749 ABC25202
Harvest21	ABC26958	465	3e-25	406 - 465	100	60 / 60	plus
Harvest35	U35_28220	465	3e-25	406 - 465	100	60 / 60	plus

Contig Sequence (465 bp)

>U35_28220 465 Hv_44K_v2
GCGAGGAGACGTTTGCGGTGAGCGGCGCGCCCAGCATCGGGGACTTCTTCCCGGCGCTTC
GCTGGGTCGACCGTCTCCGCGGCGTCGAGGCGGCGCTTGTAAGCCTGCAGACAAGGCGTG
ACGCGTTCGTCGGTGCCCTCATCGATGGCCACCGGCGAATGCGCAATGCCGGTGGCCGGG
ACGTGGAGAAGAAGGGCGTAATCGACGTGCTCTTGGAGCACCAAGAGGCTGATCCCGGGT
ATTACACTGACACCGTCGTCAAGGGCATCGTCCTGGTACTGCTCACCGCCGGCACCGACA
CATCGGCGCTGACCACGGAGTGGGCGATGGCGCTGCTTCTGAAGCACCCAGAGGTGATGC
GGAAGGCGAGGGCTGAGATAGACGCCAACATCGGCATGGGCCGACTGGTTGAGGAGTCAG
ACATCACCAACCTACCTTACCTGCAGTGCGTTGTCAAGGAGACCC

Homology of Contig U35_28220 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g39300.1	509	6e-67	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi4g03440.1	536	5e-77
Arabidopsis v10	None