barSeed - Barley Seed Development Database

Probe CUST_13303_PI390587928

Source Contig U35_44815

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13303_PI390587928	Hv_44K_v2	AGCTGTTAAAGAGTGATTCAGTGATAAGAGACCAGAAGAGGTGGTAGTGGTAAGCTTGGA	156	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.047	12.127	2.082	0.589	0.439	0.391
Raw	175.146	298.315	42.472	20.480	3.674	3.309

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74537.2	1832	2e-24	314 - 373	100	60 / 60	plus	ABC16599
MLOC	MLOC_74537.1	2363	2e-24	634 - 693	100	60 / 60	plus	ABC16599
MLOC	MLOC_74537.3	2556	2e-24	58 - 117	100	60 / 60	plus	ABC16599
JLOC1	JLOC1_49672.3	1960	8e-25	57 - 116	100	60 / 60	plus
JLOC1	JLOC1_49672.2	1796	8e-25	57 - 116	100	60 / 60	plus
JLOC1	JLOC1_49672.1	1637	8e-25	95 - 154	100	60 / 60	plus
Harvest21	ABC42979	491	3e-25	157 - 216	100	60 / 60	plus
Harvest35	U35_44815	491	3e-25	157 - 216	100	60 / 60	plus

Contig Sequence (491 bp)

>U35_44815 491 Hv_44K_v2
CTTCCCCTCCCTCCCTCCCTCCCAGCGGCGGCCGCCTCGTCGGCGGCGAGCCTCGTCGGA
CGCGCTCCTCGAAGGCGTCGGGCACCTCCCCGCGCGGCCCCTGGGGGATCCTTGCAGAGC
TTGAGTACGGACAGTCCTGCGGGGTTCATCATCACCAGCTGTTAAAGAGTGATTCAGTGA
TAAGAGACCAGAAGAGGTGGTAGTGGTAAGCTTGGAGGAGATGTACCGTGGTGGGCTTGA
CCGCTTCAAGAAAGCTCAGGCCTTGGAGCCCTTCTCGGTGCAGCAGTCTGGTTCCGGCAC
AAAGAGTGTGCCCGCGGCGGTTAAAGTGCAGCCAGCTCCATTGGTGCCGCCGCAAAGCTC
ACATCTTGGTCCCAGCCAGAGTCAGCATGCTACGCAGAGTGCTGGCTCAAGCATCGCCGG
GCAAGAGGCTGCTGGGGCTCCCAGACCAGCCGTGACGCAGTTTGGTGGTGGGCAGTCGAC
ATGGCAACCGC

Homology of Contig U35_44815 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None