barSeed - Barley Seed Development Database

Probe CUST_132_PI415269222

Source Contig TA40762_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_132_PI415269222	Hv_44K_v2	GTTGTACCTAGACTTGAACAACCAAATCCAAAATAATTTCCGAGTTTGAGGTGCAAGTAC	1644	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.066	2.146	1.384	0.859	0.255	0.211
Raw	520.338	1583.728	888.943	850.755	91.602	80.933

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64857.1	2159	2e-24	2043 - 2102	100	60 / 60	plus	ABC10937
JLOC1	JLOC1_42626.2	1987	8e-25	1834 - 1893	100	60 / 60	plus
JLOC1	JLOC1_42626.1	2242	8e-25	2089 - 2148	100	60 / 60	plus
Harvest21	ABC10937	2023	5e-23	1953 - 2008	100	56 / 56	plus	ABC10937

Contig Sequence (1707 bp)

>TA40762_4513 1707 Hv_44K_v2
CGGCACGAGGCCGTGGCCGGGGCCGCCACCGCGCTCGCCGCGCCGCCCTTCGGCCTCCGC
AAGGGCCACGTCGCGCTCATCCTCTCCCCCAACTCGGTCCACTTCCCCGTCGCCGCGCTC
GCCGCCATGTCGCTCGGCGCCGTCGTCACCACCGCCAACCCGCTCAACACCGCCGCCGAG
GTCGCCAAGCAGGTCGCCGACGCCCGCCCCGTCCTCGCCTTCACCACCCGCGACCTCCTC
CCCAAGCTGCCCCGCGGCCTCCGCGTCGTGCTCCTCGAGCCTCCCTCCCCCGCCGACGAC
CCGCGGATCGTCGCCACCATCGACGAGATCTCCGCCACCACGCCCGACCCCGCGCGCCGA
CGGGACCGCGTCACGCAGGACGACCAGGCCACGCTGCTCTACTCCTCCGGCACCACGGGG
CCCAGCAAGGGCGTCGTCGCCACGCACCGCAACCTCATCTCCATGGTCCAGATCGTCATG
AACCGCTTCCGCCTCGAGGACTCGGACACCACGGAGACCTTCCTCTGCACGGTGCCCATG
TTCCACGTCTACGGCCTCGTCGCCTTCGCCACCGGCCTGCTCGGCTGCGGCGCCACCATC
GTCGTGCTCTCCAAGTTCGAGCTCCCCGAGATGCTGCGCTGCATCACCGCCTACGGGGTC
ACCTACCTGCCGCTCGTGCCGCCCATCCTCGTCGCCATGGTCGCGCACCCCAAGCCGCTG
CCGCTCGGCAACCTGCGCAAGGTGCTCTCCGGCGGCGCGCCGCTAAGCAAGGAGCTCATC
GAAGGCTTCAGGGACAAGTACCCGCAGGTGGAGATCCTGCAGGGGTACGGGCTGACCGAG
AGCACGGCCATCGGCGCGTCCACGGACTCGGCCGAGGAGAGCCGCCGGTACGGGACGGCC
GGGCTCCTGTCGCCCAACACCGAGGCCAAGATCGTCCACCCGGAGACAGGCGAGGCGCTG
CCGGTGAACCGCACCGGCGAGCTCTGGATCAGGGGACCCTACGTCATGAAAGGATACTTC
AAGAACACAGAGGCAACACAGTCGACGGTGACGCCCGACGGATGGCTCAAGACCGGTGAC
CTATGCTACATAGACGAGGATGGGTATCTCTTCGTGGTGGACCGTCTGAAAGAGTTGATC
AAATACAAAGGCTATCAGCTGCCTCCAGCAGAGTTGGAAGCTCTTCTGCTGACCCATCCA
GAGGTTTCCGATGTCGCTGTTATTCCGTTCCCAGACAGGGAGGTCGGTCAGTTCCCGATG
GCCTATGTCGTGAGGAAGAAAGGGAGCAATTTGTCAGCGCAGGAGGTGATGGAGTTTGTG
GCGAAACAGGTAGCACCTTACAAGAAGGTGAGGAAGGTGGCGTTCGTGACAGACATCCCC
AAGAATGCGTCTGGCAAGATACTGAGGAAGGATCTTATCAAGCTCGCGACCTCCAAGCTG
TGAAATGTGGACCGTTATCCTGCTCTGTGTATTATCCCTTGAAGTGTCAATTGGTTCATC
CTTGGATCTTCATCATTGTACAACTATTGTTTTCTTTTTGCCCTTCGTCCCAATAGCCCT
CTGACTATCTGTAACTGAAGGATCTCAGCGGCTGTGTACTAGTACATGAGGTCTCTGTGT
AAATTGGTTCTATATACAAGCTCTGTTGTACCTAGACTTGAACAACCAAATCCAAAATAA
TTTCCGAGTTTGAGGTGCAAGTACTGC

Homology of Contig TA40762_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g04000.1	553	protein\|AMP-binding domain containing protein, expressed
Brachypodium v1_2	Bradi1g76280.1	552
Arabidopsis v10	AT1G20510.1	546	\| Symbols: OPCL1 \| OPC-8:0 CoA ligase1 \| chr1:7103645-7105856 REVERSE LENGTH=546