- Probe CUST_13290_PI390587928
- Source Contig U35_32840
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13290_PI390587928 | Hv_44K_v2 | ACATCGCTGATGAAATTAAGTTTCAGCAGTGGTTTGTTTAATACTTTCTGAGCTGATACT | 16 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.879 | 3.408 | 1.344 | 0.597 | 0.277 | 0.247 |
| Raw | 97.660 | 136.503 | 45.583 | 35.249 | 3.517 | 3.322 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_9891.1 | 3500 | 7e-23 | 552 - 611 | 98 | 59 / 60 | plus | ABC02265 |
| JLOC1 | JLOC1_6429.1 | 500 | 2e-21 | 444 - 500 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_32840 | 448 | 3e-25 | 17 - 76 | 100 | 60 / 60 | minus |
Contig Sequence (448 bp)
>U35_32840 448 Hv_44K_v2 TACCATAAAAATAGAAAGTATCAGCTCAGAAAGTATTAAACAAACCACTGCTGAAACTTA ATTTCATCAGCGATGTAAGGACTAAATTTGCTAGTACATATGATTCCTCTGTTGAGGAGG AGGGGTGGGGGAAGAAAGATAAGTAAAAGGAAAGCTTGACGTGATGAGTTTGACGGATTA CATGTTGTAATCATTTTACTGAAATGAGACTACAGAAAATCTGCAACTGCCGTTCAACAG TGCCCAAAAGATTAACATATCGCGTGTGCCCAATTGTTCTAGAGCCTTACAGGTATACTG AGACCATCATAGCTAAGCTGGACGTCAAGCCCCTCTGTTTCCATCAGCCTGGCAAGATCA TCGTTCACTTTCTCATGGTCCATTAAATGCATCATCCCGGTAAACAGTGTTCTCTTTGGT TTGATTTTCCTGACTTCCTCGAGGGCCC
Homology of Contig U35_32840 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |