- Probe CUST_13284_PI390587928
- Source Contig U35_18552
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13284_PI390587928 | Hv_44K_v2 | TCATGCTCGACGGCTACATCGACCTCTACGGGCCTTACGATAAGCTGCTGCTCAACTGCT | 320 | GeneList: thistle1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.822 | 5.005 | 1.347 | 0.869 | 0.777 | 0.824 |
| Raw | 77.408 | 68.482 | 16.513 | 16.118 | 2.779 | 4.634 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_28183.2 | 697 | 2e-24 | 493 - 552 | 100 | 60 / 60 | minus | ABC09479 ABC21479 ABC46705 |
| MLOC | MLOC_28183.3 | 808 | 2e-24 | 648 - 707 | 100 | 60 / 60 | minus | ABC09479 ABC21479 ABC46705 |
| MLOC | MLOC_28183.1 | 786 | 2e-24 | 493 - 552 | 100 | 60 / 60 | minus | ABC09479 ABC21479 ABC46705 |
| MLOC | AK361846 | 925 | 7e-23 | 372 - 431 | 98 | 59 / 60 | plus | ABC09479 ABC21479 ABC46705 |
| JLOC1 | JLOC1_18943.1 | 712 | 8e-25 | 147 - 206 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09479 | 952 | 3e-25 | 392 - 451 | 100 | 60 / 60 | plus | ABC09479 |
| Harvest21 | ABC09478 | 443 | 3e-25 | 321 - 380 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09480 | 867 | 1e-23 | 316 - 375 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_18553 | 952 | 3e-25 | 392 - 451 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_18552 | 444 | 3e-25 | 321 - 380 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_18554 | 867 | 1e-23 | 316 - 375 | 98 | 59 / 60 | plus |
Contig Sequence (444 bp)
>U35_18552 444 Hv_44K_v2 TCCATCTGCCCCATCAGCGGCAGCCGTCGAGACGGAGGAGGCTCCGTGCCGTCCGCGCCG TCGAGACGGACGCCCCCGCCGCCGCAGCAGATTCTGAGGCGACGGTGGAGCCGCCGTCCG TCGACTTTGCGTTCGTCAGCGTGAGTCCTTCCCTCCTGCCTCCATCGGTCATTGGCTCTC CTCTATTTATTTATTTATTTATTTCCCCCTTCCGTTCGGCCGGCGATGATGCCGCGTGCG ATCGCAGCCCCGGCTGCTGCCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGG CGGGCAGAAGCTCAGGGACATCATGCTCGACGGCTACATCGACCTCTACGGGCCTTACGA TAAGCTGCTGCTCAACTGCTCGGGGGGCGGCGAGTGCGGCACCTGCATCGTGGAGGTGGT GGAAGGCGGCGAAATGCTGTCTCC
Homology of Contig U35_18552 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |