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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13283_PI390587928Hv_44K_v2GAACTCAAATGTAAAATAATCCAACATGCTCCAATGCCCAGATTTGAAATAATCAAGGCA876GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.6642.1932.4450.4110.9420.839
Raw 19.80026.71223.7192.9333.1632.626



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC094799523e-25877 - 93610060 / 60plusABC09479
Harvest35U35_185539523e-25877 - 93610060 / 60plus



Contig Sequence (952 bp)

>U35_18553 952 Hv_44K_v2
CAAATATAGCAGCAGCCCAGGATAAGATTCTAAAACCTTAGACGATTGTGCAGCTCGCAG
GCTGCGGCAATGGCGGCGACACTGCAGTTCGTCAGCCTGCTCGGCACCACCTCCGCCCAT
CCAGCTCCTTCCTCCTGCAGCAGCAGCAGCAGCAGCAGCGAGAAGCACCACCGCTCAGTC
CATCTGCCCCAGCAGCGGCAGCCGTCGAGACGGAGGAGGCTCCGTGCCGTCCGCGCCGTC
GAGACGGACGCCCCCGCCGCCGCAGCAGATTCTGAGGCGACGGTGGAGCCGCCGTCCGTC
GACTTTGCGTTCGTCAGCCCCCGGCTGCTGCCGGACGGGACGCCGGACGTGCACTACCGG
ACGGCGTGCGGCGGGCAGAAGCTCAGGGACATCATGCTCGACGGCTACATCGACCTCTAC
GGGCCTTACGATAAGCTGCTGCTCAACTGCTCGGGGGGCGGCGAGTGCGGCACCTGCATC
GTGGAGGTGGTGGAAGGCGGCGAAATGCTGTCTCCGAAAAACGAAGTGGAAAAGGAAAAG
CTTAAAAGGAAACCCAAGTCATGGAGGCTGGCGTGCCAGGCCACGGTTGGCAACCCAGAT
TCAACAGGACAGATGGTCATACAGCAGCTACCAGAGTGGAAGGTGCACAAGTGGGACAAG
TGACCGTCGTATAACATTATGATGATTATGCGGTGGGCCTCATGACCCCGGAAGAATTAA
GCAGGAGCTACATGCACATGCACTTGGTCAGAAGGAGAAGAACCAGACGCTGTCTGTTGG
TGAAGCCTCAACGAGGACTTTATGTAAAGGACACGGAGATATATATGTGAAAGGCGTCCC
GTAGAACTAGAAGCAAAGGCGCAGTTCGTTGCGCTCGAACTCAAATGTAAAATAATCCAA
CATGCTCCAATGCCCAGATTTGAAATAATCAAGGCAAAAAAAAAAAAAAAAA



Homology of Contig U35_18553 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os07g30670.12113e-81protein|2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
Brachypodium v1_2Bradi1g27280.11881e-87
Arabidopsis v10AT3G16250.12041e-59| Symbols: NDF4 | NDH-dependent cyclic electron flow 1 | chr3:5507091-5508320 REVERSE LENGTH=204