barSeed - Barley Seed Development Database

Probe CUST_13279_PI390587928

Source Contig U35_18555

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13279_PI390587928	Hv_44K_v2	CATTGCTTACCATGTAACTATTGCACATCATTATCTTGCGTCTGTTGAATAAGAACGTTT	688	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365325	781	2e-24	698 - 757	100	60 / 60	plus	ABC04557 ABC09911
JLOC1	JLOC1_42226.1	947	8e-25	752 - 811	100	60 / 60	plus
Harvest21	ABC09912	574	3e-25	451 - 510	100	60 / 60	plus
Harvest21	ABC09911	770	3e-25	689 - 748	100	60 / 60	plus	ABC09911
Harvest35	U35_18555	826	3e-25	689 - 748	100	60 / 60	plus

Contig Sequence (826 bp)

>U35_18555 826 Hv_44K_v2
CTTTTATCCTCCGCCTCGATCCCATCGCCGCCCTCGATCTCGCCGCCGCCGACGCGCGCC
GCCATGGCGAAGGCGAAGCCGTCGACGTCCTCGGCGAAGAAGCAGGCGGCGAGGAGCCAG
GGGGCGCAGCGGGGCGGCGGCGGCGGAGGGCACGCGGCGCCGTCCGGGCTGGCGCGGTAC
CTCGACCCGGAGGCGCCGTGGGACAAGGACCAGCTGCTGGACGCGGTGCACTGGATCCGG
CAGGCCGTGGGGCTCGCCTGCGGCCTCCTCTGGGGCGCCGTCCCGCTCGTCGGCGCCGCC
TGGATCGTCCTGTTCGTGGCCATTTCCTCTGGCATAATTTACTGGTACTATGCGCAACTA
TTGAAGGTCGATGAGGAAGAGTTTGGAGGCCACGGCGCGCTGCTTCAGGAGGGGATGTTC
GCGTCTTTCACCCTTTTCCTGCTTTCATGGATTCTTGTATACAGTCTGGCTCACTTTTGA
TGAGAAGATCCTTTGTTGAACATACCATGATGGGACTTCCGCCTTCGGATCGGGTCGGCC
TGAAGGGAGTTCACCAGAACCTCTGTAGATTATTAAAGAGCCTTAGAACAGCAGCAGTGT
ATCGAATCGGTTCAGGCAGTAATGTTGTTCCTGAATCCCGGTGTAATTTTTTATGAGTAT
GGGTAGGTCAATTCAGCATGAGCTAGAACATTGCTTACCATGTAACTATTGCACATCATT
ATCTTGCGTCTGTTGAATAAGAACGTTTTTGACAAAAAAAAAAAGACATATTATTGATTC
CCCATGAAATATATTGTTTTTTGTGATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18555 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01994.1	128	2e-61	protein\|rab5-interacting protein like, putative, expressed
Brachypodium v1_2	Bradi2g39170.2	138	5e-63
Arabidopsis v10	AT5G59410.1	130	2e-52	Rab5-interacting family protein \| chr5:23959761-23960730 REVERSE LENGTH=130