barSeed - Barley Seed Development Database

Probe CUST_13276_PI390587928

Source Contig U35_18558

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13276_PI390587928	Hv_44K_v2	TTGTTTTGTGGAAACTAAACTTGATTGCACGCGGGTTGTCTGGGCTACACATGTCATGAC	1201	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.603	1.369	0.904	0.930	0.518	0.760
Raw	332.229	427.697	261.076	417.073	80.763	130.884

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57575.1	2199	7e-23	1979 - 2038	98	59 / 60	plus	ABC10566 ABC10567
MLOC	MLOC_57575.4	1544	7e-23	1472 - 1531	98	59 / 60	plus	ABC10566 ABC10567
MLOC	MLOC_57575.2	2202	7e-23	1982 - 2041	98	59 / 60	plus	ABC10566 ABC10567
JLOC1	JLOC1_37338.3	1692	4e-23	1432 - 1491	98	59 / 60	plus
JLOC1	JLOC1_37338.2	1693	4e-23	1433 - 1492	98	59 / 60	plus
JLOC1	JLOC1_37338.1	1696	4e-23	1436 - 1495	98	59 / 60	plus
Harvest35	U35_18558	1286	3e-25	1202 - 1261	100	60 / 60	plus

Contig Sequence (1286 bp)

>U35_18558 1286 Hv_44K_v2
GTGTATTCTCAGGGAGAGCGCCCCACTTTCCCATTATACAATGCAATTCCTCGATTGTCA
GTGTCCGAGATTTCTGATGACCATGGTGGAGGAGCGGTATCACCTCTAAGGAAGCTAGAT
CATTTGCATTTGGATCATCATCCATCAAATGGTCAAAGATTTTCTCTAGATTCTGATCGC
CCAAAAGATGATGTTGGACTTCCTCTCACGCCAAAACATGTTGAACCATCTGGATCAGAA
GGCTTTATGAGAGGAAGATCATATAATATACGAATAGATGATCAAGTCTTGCTTCGTTTC
TCACCAAAGAATTCTGACTCAACTTATTACTTTGGTGATATGATTGGTGGAGCACTCACT
TTTTTCCATGGAACTGGAACACGGAGATGCCTAGAGGTATCTATAACCTTGGAAACATCA
GAAACAATTAATCCTCGTGTAATACACCCTTCACGAAGGGTCTCACCGACAATAACCAAG
GTACACAGTGAACATCATGAAGTTGTTGCAGATCTTCACCAAACAAGTTTTCTCTTCTCA
ATTCCTATTGAGGGACCAATGTCATTTGCTACCTCAAAGGTTACTGTACAGTGGTCCCTT
AGATTTGAGTTCTTCACAACTCCGGCAGGAATGGACTCATCAAGGTATGAGCACCCACTT
CTTGTTGAGAAAAGAGAGAAGGGGGACTGGGTCCTCCCAATAACAGTTTATGCACCTCCA
ATGCGTAGACGAGCTACTCATGGAAGAAACGGTAGATCTGCATTAGTTGGAAATCTGTTC
AACTCTTGAAGATGAACAAGTTGCTGTTGCTGTTATTTGAAAATCGGTACCTGCCTGCGG
ACCTTCGGTGGGTGCTACTGTATGTAGTTCAGCACGCACAACTGCACCCAGGCCATATGT
GTAAAATGTCCAGAAGGTTTTGAAGAAGACAGTGAGCGAGAGGGAAACTTGGGTTGCACA
AATAGTCTGCTTCTGTCTGATGTACACAAACAGTCTTTCTCTCATCACCAGAGAACATAA
CAGGTTGGCACTTGATTTACGTGATGCGGACATGCGTAGCGCAAGATACTACACAGAGCG
TACCGAGTGTATACCTTTTACCCGATGGACTGGTTTTTTGGGGCGCTTGATTAAGCTATT
AATTACATCCTCACAAAAAAATGCATACCCACACACACAGTACATCTTCGTCGCAACTCC
ATTGTTTTGTGGAAACTAAACTTGATTGCACGCGGGTTGTCTGGGCTACACATGTCATGA
CGGCGAGTTTCGGCAATTTTCCAGGA

Homology of Contig U35_18558 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g41440.2	552	1e-153	protein\|expressed protein
Brachypodium v1_2	Bradi1g35900.5	547	2e-168
Arabidopsis v10	AT1G50120.1	532	1e-84	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). \| chr1:18562302-18566015 FORWARD LENGTH=532