barSeed - Barley Seed Development Database

Probe CUST_13273_PI390587928

Source Contig U35_18559

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13273_PI390587928	Hv_44K_v2	GCAACCGGGCAATCAATTGCAGTCTTGGCATGCTCCGTTGCTCTTGTAGTTGTTAAAAAA	887	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.570	1.338	1.909	1.527	0.732	0.863
Raw	169.254	584.356	754.454	966.395	157.876	202.250

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66563.1	1996	9e-22	29 - 83	100	55 / 55	minus	ABC09538
MLOC	MLOC_66563.2	2048	9e-22	29 - 83	100	55 / 55	minus	ABC09538
JLOC1	JLOC1_43878.2	2326	5e-22	1957 - 2011	100	55 / 55	plus
JLOC1	JLOC1_43878.1	2273	5e-22	1904 - 1958	100	55 / 55	plus
Harvest35	U35_18559	952	3e-25	888 - 947	100	60 / 60	plus

Contig Sequence (952 bp)

>U35_18559 952 Hv_44K_v2
TTTGCATATCAATTTTCGCAACCTTAGCCCTATAAGCTGCATATGGCTTCCGGAAACCTA
CACAAACACACCAAGATTGAAATGCGAGCTGAAACGGCCGAAACTGGTACATCTCAGGAA
AGTACAGAGTCACCTAAGAAGAGCTTATGGAAAAATTGGCCATTGATGTCATCAATTATC
ACATATTGTGTCTTCTCCCTTCACGACACTGCGTATAGTGAGATATTTTCTCTGTGGACT
GTAAGTGGTAGAAAATATGGTGGACTTAGCTTTTCATCTAAGGATGTCGGACAAGTTCTT
ACAGTGGCAGGCGCCAGTCTTCTTGTATACCAAATCTTTGTTTATCGTTGGCTCAATAAT
ACGCTAGGACCTGTAAACTCAACCCGCATCGCATCTGAATAAGACTTGGTCTGGCTCTCT
ATATTGCAGCAATGATTAAAAGCGTTCTTGCTATAACTAGAGTTTCTGGCACTTCTCTCC
TACAAAACAATGCTGTGCCACAAGGGCAAAGAGGTGCTGCAAATGGAATAGCCACAACAT
TAATGTCCTTATTCAAGTCTGTTGCTCCAGCTGGGGCAGGTATCCTATTCTCGTGGGCAC
AGAAGCGCCAGCACGCAGCGTTCTTTCCAGGTGATCAGATGGTGTTCCTTCTGCTGAACC
TGACAGAGGTCCTTGGGCTCTTGTTGACATTCAAGCCTTTCCTGGCAGTCCCCGAACACT
ACAAGTAAAACCTGACAGAGTACGACTGTGTTAGGTAGTGCTAGAGAGCGATGCGTGTGG
TTCTGTGGCACTGGCATGCTATAAGCGTGAAGACTGAAGAGTCTTGTTTTGTTGTACTAC
TTTTAGATAGATGTAGCAAGTGTTGTTGGCACTGTGACCTAAAGCAAGCAACCGGGCAAT
CAATTGCAGTCTTGGCATGCTCCGTTGCTCTTGTAGTTGTTAAAAAAAAAAA

Homology of Contig U35_18559 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g04030.1	471	2e-91	protein\|major facilitator superfamily antiporter, putative, expressed
Brachypodium v1_2	Bradi4g43580.2	486	3e-92
Arabidopsis v10	AT5G13740.1	486	2e-51	\| Symbols: ZIF1 \| zinc induced facilitator 1 \| chr5:4432689-4436483 FORWARD LENGTH=486