barSeed - Barley Seed Development Database

Probe CUST_13269_PI390587928

Source Contig U35_44825

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13269_PI390587928	Hv_44K_v2	AGCTGCAATGCTAAGTGTCATGGAACATGGAGAAAAACTCTCTGGAATGATCCATCTGAG	480	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69036.2	2906	2e-24	659 - 718	100	60 / 60	minus	ABC02804 ABC02809 ABC02810 ABC02811 ABC50535
MLOC	MLOC_69036.1	2969	2e-24	691 - 750	100	60 / 60	minus	ABC02804 ABC02809 ABC02810 ABC02811 ABC50535
JLOC1	JLOC1_45728.1	2939	8e-25	2221 - 2280	100	60 / 60	plus
Harvest21	ABC42997	543	3e-25	481 - 540	100	60 / 60	plus
Harvest35	U35_44825	543	3e-25	481 - 540	100	60 / 60	plus

Contig Sequence (543 bp)

>U35_44825 543 Hv_44K_v2
CAGAACGCAGCTTATCACGAAAGGTAGCTGTAATGAAGCGGTCGCTGAAGAGAAAAGGAG
AAGTCAGGCATTCAGTGCCAGTATTGTTCCCAGAAGAGTTAGCTCTGAGGCTTGGAGTGC
TGGAGACAGGCAAAGACCAACATTAACTGGCGTAGCTCAGCAGGCTGTGGTTGATGAAGA
GGCTGAGATGTTACTTAATCGGCTGTTTCATGATTTTATTTTGTCTGGTGCTGTTCATGA
GGCACTTCAAAAGCTTAGAGTAGCAGGGGCATTTGAGAAAGAGGGTGAGATGAATGTGTT
TGTTCGAGTAAGCAAATCTATCGTAAACACATTATCTAAGCACTGGACAACAACTAGAGA
AGCTGAATTTCTTGCTTCAACAATTGTTTCATCCCTTGCTGAGAAACGTCAAAAACACGA
GAAATTCCTTCAATTTCTTGTCTTGTCCAAGTGCCATGAAGAACTCTCTTCAAAACAAAG
AGCTGCAATGCTAAGTGTCATGGAACATGGAGAAAAACTCTCTGGAATGATCCATCTGAG
AGA

Homology of Contig U35_44825 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12450.1	1291	2e-98	protein\|nucleoporin, putative, expressed
Brachypodium v1_2	Bradi1g69360.1	1294	1e-100
Arabidopsis v10	None