barSeed - Barley Seed Development Database

Probe CUST_13261_PI390587928

Source Contig U35_20873

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13261_PI390587928	Hv_44K_v2	TCAGCAGTGTTTGAGTTCCTTCTCCTAGAACTTGACGAACCCTTGGGTATAATGTCAAGC	1730	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.614	1.657	1.177	0.925	0.331	0.385
Raw	357.258	585.380	362.454	435.857	56.581	70.203

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_41124.3	2819	1e-23	2762 - 2819	100	58 / 58	plus
JLOC1	JLOC1_41124.2	2830	1e-23	2773 - 2830	100	58 / 58	plus
JLOC1	JLOC1_41124.1	2972	1e-23	2915 - 2972	100	58 / 58	plus
Harvest35	U35_20873	1846	3e-25	1731 - 1790	100	60 / 60	plus

Contig Sequence (1846 bp)

>U35_20873 1846 Hv_44K_v2
CAGGGTCCGCCTAAAACATATTTACTGANTAGAATGAAACTATCTCAAAGGCAATTGAAG
TCATTCTCCCAGAGACACGCCATTGTCTTTGTCAGTGGCATATCGAAAAGAACCTACAGG
CCCATTTGGATACACCAAATGGTTCTGGAACATTTCATAGCATGTTCATGAAATGCATGA
AAGATTGCGAGTCAGAAGCAGAGTTTGAGGAAACATGGGCAATGATGCTTCATGAGCATA
ATTTGCAGGATCACCAGTGGCTCACTGATCTATTTGAGCAGAGGCATAAATGGTGCACAG
CTCTTCACAAAGTTGCATTTGATTGTGGTATTAGATCACTGGATATGAATTTTAGTTCAC
ACAATGTGCTGGGCAGCATTGCTGATGAATCAACTTCACCCACTAATTTTGCTCTTGAGT
TTGATAAACTGGTTGGGAGTTGGCGTACAAATGAATCTGTAGATGATATTCAGTGCAACC
AGATTTCCCCAGAGTCTTCAGTTAAGCAGAATAGTATTTTGCAACATGCTGCTGAAGTTT
ACACACATAAAGTCTACAAGTCTCTTGAAACAGAGTTTCTAGACGGATGCAGTGGAACTT
CATACCAGGAAATGCAATGCAGTGAAACACTGTATAGATTTGAGTTCATTATGCAAAGTG
GTCCAAAAGTTTGTCTAGTTTACCTTGACACCTCTACCATGGAATTGAGCTGTAGTTGCA
AAAAATTTGAGATGATGGGCATACTTTGTTTGCATGCACTGAATGCACTTGGTCTCAAGA
ATCTTGATAAAATTCCTGAAAGTTATGTTTTAAAGCGATGGACAAAATATGTGAGGAAAG
GAACTTATGTATTTCCAAGTGACCAGTCTCCAGAACAAGATTCCACAGAGGCTGTGCTTG
CATATCGTAACCGGGCTATGTGGTTTGTTTATGATTTGCTGATGAAGAGCAAAGGTCATC
AGGATACAAGAAAACTTGTTCTTGACGTGCTTGAAAATGGAGAAAAATCATTGGAAAGTG
TATGTGAACTCAAAAGGATGCATATACATCCCTCAGGAAAGGACAAAGATGCAAGTAAAG
CTGAGAAGAGGAAAAAAAAGTTATCTAAGCAGGATAAAAATTCAAGAAATGTTAAACAAG
CGGTTTTGCCTCCGTCAGCCGAGTCAGTTTTTGTCGACCAACCAAATCAAAATCAGTATT
TTGCAACAGAAGATATTGCAACAAACTCATCTATTGGTAGGCCTTTCTTCTACCAGGAAT
ATCCTGCTACTGGTGTTTCAGCAAGTCAGATTGAAGGGCATGCAAATATGCATTCCGTTC
CACAGTGTGCACCAGCACCACAGGAATTTCCAGCATATGACGCAGTCCATCCCCCATCTA
CATTTGGTGGCGAAAGTAATTTCTGAAGAATGCTAATATCAGAAGTTCATATTTCATTAA
CTGATTGTTGTATGGGCATGGTGTGTTGAATCCTAAACTGCATGTAAAATAGTCATTCAA
AGAACATGGAGAAGAAACCATGGTAGTTCGTGTTTGTAAACTTCTGAGATGGTATAAGAT
TTAATGGAAATTTCCTGATCATAGCAAGTCCAGTCACTTTGTTCTAATTTCCCATTTCGT
GACTGGTCAGGGAACATTATTTTTTCTATTTAAGTGGTTCAAGAACTGTGACAAAATTCT
TGGGGGCGGACATTCTTGCTATATCAAGTTTTCTTTGGTACAGATCTAGTTCAGCAGTGT
TTGAGTTCCTTCTCCTAGAACTTGACGAACCCTTGGGTATAATGTCAAGCTTAAATTATA
AAGATATTAAATTATAAAGATATTATTGCCAAAAAAAAAAAAAAAA

Homology of Contig U35_20873 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g06380.1	818	0.0	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi4g41960.1	856	0.0
Arabidopsis v10	None