barSeed - Barley Seed Development Database

Probe CUST_1325_PI390587928

Source Contig U35_4907

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1325_PI390587928	Hv_44K_v2	TCAAAACTTCAGGCCGGAATCAAAGCATGTGCGGCCCATATTTGTATGTCCCCGAAAAAA	1675	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.400	1.408	1.109	0.945	0.441	0.607
Raw	43.553	63.054	47.569	59.104	9.880	15.379

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_4907	1746	3e-25	1676 - 1735	100	60 / 60	plus

Contig Sequence (1746 bp)

>U35_4907 1746 Hv_44K_v2
GGTCAAGTCTTCTCAAAAAACACCAATCCAAATCCAACCACCGGCCCGGGCGGAAAACGT
CGCACTTTATTTATACCCGGCCACGCGCTCCACCACGGCGACCCCGACGGCTCCCCCCTC
CCCTCCGCCCGCTCCTAGCTCCAAGCGCCGCCGTAAGACTGACCCCGCCGCCGGAGCGAC
GGGGAACTCGCCGCTGCGCGGCGGCGGGAGAGGCCGCTCGCCGGCTTCCTCCGCCCCGCG
CCGCTCTTTGCCTGGGCCTACAGGGAAGGGTGGGTTTGACCCGCTCGACCCCACCGCGGA
TCCGCCTGCCCGGGTGCTGACGCCGGACCAGGTGAAGCACTGCAAGACGGCGCTCAAGGT
GTTCGACAAAAAGCTCAAGAAGCCGGCCGCAATATTCGAGGACTTTGGAGGCCTTCCGGC
CATAAGAACATCGCTCCAGTTGGCTCAGAAGTTTACTGTGGCTCGAAGTCCTGCTAATAG
GGAAAGGAACCGCTACACTGATGTCTTGGCATTTGATGAAACCAGGATAAAGCTACAGTC
CTCAACAGGCAGTCTGACTTCAAGTAATGATTACATCAATGCAAGCCTTATAAAGTATGA
TGACAAAGATCATATAAAGTTCATTTCTACCCAAGGTCCGTTAGTCAATACATTCGAAGA
TTTTTGGCAGATGGTCTTTGAGAACAGCTGTCCTGTAATTGTTATGCTCACTAAATTTGA
CATTGTTAAGTGTGATGAGTATCTTCCACTGAGCAAGAGCCAAGAAGACTATGGAAGATT
GAACATTAAAATCGTGGAGACCAGACAAGATGGGGAGTTAACATTGCGCAGTGTGAAGGT
GCAACATAAGGAGTCAGATAGAGTGCATACTGTTCTCCACATCCAGCACTCCACATGGCC
TGACCATGGTGTGCCAAATGACAGCAGTACTGTAAGGAAGATTCTAAAAAGATTATATTA
TGTTGGGAAAGACCACCCAATTGTTGCACATTGCAGTGCAGGCATTGGGAGAACTGGTGC
TTACATCACAATCCATAATACAGTAGAGAGAATATTACGTGGTGATCAAGCTGCTACAAA
TCTTGTGGAAACTGTCGGGAAGTTTAGATCCCAGAGACCTGGCATCGTCCAAACAGAGGA
ACAATACAAGTTCTGCTATCATGCAATTGTGGATGAGCTGAAAGATCTGATTAGGAATTC
AAAGCACTGAAGCATTTTTGGCGGGATGAAGGGTGTGTCCTATGCAACAGCCTGACATGT
CTGACCATCTATTACCTTCTCACTTGCTCAATTTGTTAAGCTTAGCTGACAGCATTGTTG
TACATCATGAGGGCTGGGATTTGGATTTCAGTACGAAGCTCCTTGAGCTTTCCCCTCTTT
TCTGCTCAGGATTTCACCAATTTGATCCTGTCGCTGTGTCACATCCAGAATCACGCGTGT
ACCTCACTATGCATTCACCTGTATTGCTTCTCTTGCTGAATTATTATGTACTGAGGCCAG
AAGGTTGATATATATCAACTGGTGCATTACAAACTAGCTTGTGCGGGCTGATGAAAGATG
TATGAACTCAGATGTCTAGGAAAGTTTGACGCGGACACATCTAGAAATGGAGATAGGAGC
GTTTCTTGATACACCTCTTGTTTGCTTTGCTTCTGTCCAGATCTTGATGCTGCGTTCAAA
ACTTCAGGCCGGAATCAAAGCATGTGCGGCCCATATTTGTATGTCCCCGAAAAAAAAAAA
AAAAAA

Homology of Contig U35_4907 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g07590.2	329	1e-109	protein\|Protein-tyrosine phosphatase domain containing protein, expressed
Brachypodium v1_2	Bradi4g24010.1	1050	1e-155
Arabidopsis v10	AT1G71860.1	340	2e-84	\| Symbols: PTP1, ATPTP1 \| protein tyrosine phosphatase 1 \| chr1:27026866-27028675 FORWARD LENGTH=340