barSeed - Barley Seed Development Database

Probe CUST_13257_PI390587928

Source Contig U35_20877

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13257_PI390587928	Hv_44K_v2	AGAATTGACCAGGTGACTGACACTGAGTTATTCTTCCTAGCATCTATGTACTTTGCATTT	680	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354365	2392	2e-24	760 - 819	100	60 / 60	plus	ABC11808
MLOC	MLOC_33189.2	2585	2e-24	468 - 527	100	60 / 60	plus	ABC11808
MLOC	MLOC_33189.3	2845	2e-24	601 - 660	100	60 / 60	plus	ABC11808
MLOC	MLOC_33189.5	2831	2e-24	449 - 508	100	60 / 60	plus	ABC11808
MLOC	MLOC_33189.4	3039	2e-24	586 - 645	100	60 / 60	plus	ABC11808
MLOC	MLOC_33189.1	4533	2e-24	784 - 843	100	60 / 60	plus	ABC11808
JLOC1	JLOC1_21534.1	2625	8e-25	538 - 597	100	60 / 60	plus
Harvest21	ABC14062	739	3e-25	680 - 739	100	60 / 60	plus
Harvest35	U35_20877	740	3e-25	681 - 740	100	60 / 60	plus

Contig Sequence (740 bp)

>U35_20877 740 Hv_44K_v2
TCTCGACCTACATCACTACAGCTAGCGTGCGTCTTCCCCGCGTGGCCGCGTGGCCTACAA
CAAGCCGCCGCCGCCGTGCCGTGCCGTGCCCATACCCCACGGCCGCCGGCTGACGCTGAC
GCCCCCCCTCAAACCTCTCCACCTTCGCCGTTCCCGTTCATGTTCATAGCGTCCCTGTCC
CTGCTTGTCCCTCCCCCGCCCGCAAGCCGCAACCTTTGGCCACTGGATTTAAAGGTAGTG
TACTGATGAAGACAGAGATCGAGGAGGAAGTCACCAAAGGGTCCTGGACTGAGGAGGACA
AATCCCTTTGTGCTTCTGTGCTGGGCTTAGATGCCTTCACATATCTGACAAAAGGTGGAG
GCGCCATATCTGAAAATCTTGTAGCAGCGTCTGTGTTGGTGGGCTTGCAAAATAAACTCC
AGGACCTGGTTGAAGCTGATGGTCAAAGCCTTTGCTGGAACTACGCCATCTTCTGGCAAC
TCTCCCGCACCAGATCCGGTGAACTTGTCCTTGGCTGGGGTGACGGGTCTTGCCGTGAAC
CCCATGATAATGAGATGAACTCGACTACTCGTGGCGATATTCATGATGCATCTTCACTGA
GCCAACAAAGGATGCGTAAGCGAGTGTTGGAGCGACTGCATACAGCATTTGCTGGGGCTG
ATGAGGAGGATGATGCTCTCAGAATTGACCAGGTGACTGACACTGAGTTATTCTTCCTAG
CATCTATGTACTTTGCATTT

Homology of Contig U35_20877 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g13460.1	618	4e-67	protein\|helix-loop-helix DNA-binding domain containing protein, expressed
Brachypodium v1_2	Bradi2g08080.1	618	5e-67
Arabidopsis v10	None