barSeed - Barley Seed Development Database

Probe CUST_13252_PI390587928

Source Contig U35_18560

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13252_PI390587928	Hv_44K_v2	TCTATACCAATTATTGCTGCTTATCCCTTTATGACACACTTGTCAGGAATAAGACTTGGT	1416	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.337	1.227	2.847	1.991	0.856	0.570
Raw	4.468	29.777	63.873	78.967	10.295	7.430

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66563.7	1474	2e-24	72 - 131	100	60 / 60	minus	ABC09538
MLOC	MLOC_66563.6	1743	2e-24	175 - 234	100	60 / 60	minus	ABC09538
MLOC	MLOC_66563.2	2048	2e-24	561 - 620	100	60 / 60	minus	ABC09538
MLOC	MLOC_66563.3	2080	2e-24	530 - 589	100	60 / 60	minus	ABC09538
JLOC1	JLOC1_43878.2	2326	8e-25	1420 - 1479	100	60 / 60	plus
Harvest21	ABC09539	1655	3e-25	1425 - 1484	100	60 / 60	plus
Harvest21	ABC09538	943	3e-25	541 - 600	100	60 / 60	minus	ABC09538
Harvest35	U35_18560	2016	3e-25	1417 - 1476	100	60 / 60	plus

Contig Sequence (2016 bp)

>U35_18560 2016 Hv_44K_v2
CGTGGTTGGCTTGCCGCTCCAGTGACCCGCCGTAACTACGTACGCCAGGCTCCCGCGGTA
AGCTGGATTTGTCTCGACCGATCGTGATCGATCTGGTGCGCTGGTGTCCTGACGTGTCCC
TCGCCGTCTGCTGCCAACGGGGCACACGTACCAAGACACGATCCACACGACAAGCTTCTT
CAACTCGCCCCCACTCAACTCCTGCTTCCTCTTCTGCCCCGGCCGGCCGGACGCCTCCTC
CCCGCCTTTCTCAGGCTCTGCTAATCCTTCTCCGTCTCAGCCTGCCGCACCGTCCCGTTC
CGCCAGCCAGCCATCATCTCAGCGTCGCCCTCGTCGTCGTGGTCGATCGTCTAGCCGAGA
AGGATGGGAGAGTCGCCGTCACCAGCGCCGGCGGCTGTAGCCAAGGTGTACTACGACGGG
TGCCCCGGGTGCGCCATGGAGCGGAGGAAGGAGAGCACCAAGGGGACCCCGTACAAGGAG
CTCTTCTTCGTCGGGATCATCACCTTTGCATCATCTTTGCCGATCACGTCGTTGTTCCCG
TTTCTCTACTTCATGATACAAGACTTGCACGTTGCTCAAAGAGAAGAAGATATTGGATTC
TATGCTGGATTTCTTGGTGCATCGTATATGGTGGGTAGAGGTTTCGCATCAATCTTTTGG
GGCATGGTTGCAGATCGCATCGGGCGAAAGCCTGTAATTGTATTTTCACTTTTCACGGTC
GTTGTGTTCAACACTTTATTTGGATTAAGTGTGAAGTACTGGATGGCTATTACTACAAGG
TTGCTTCTTGGTGCACTAAACGGATTTCTAGCACCAATCAAGGCTTACTCCATTGAAGTT
TGCCGGGATGACGAACAAGCTTTGGGCATATCAATTGTTAATACAGCATGGGGAGTAGGC
CTTATAATTGGCCCAGCAATTGGGGGTTACCTTGCTCAGCCAGCCAAACAATATCCACAC
ATTTTCCATGACAAGTCAACATTTGGGAGGTTCCCCTATCTTCTTCCATGTCTTTGCATA
TCAATTTTCGCAACCTTAGCCCTCATAAGCTGCATATGGCTTCCGGAAACACTACACAAA
CACACCAAGATTGAAATGCGAGCTGAAACGGCCGAAACTGGTACATCTCAGGAAAGTACA
GAGTCACCTAAGAAGAGCTTATGGAAAAATTGGCCATTGATGTCATCAATTATCACATAT
TGTGTCTTCTCCCTTCACGACACTGCGTATAGTGAGATATTTTCTCTGTGGACTGTAAGT
GGTAGAAAATATGGTGGACTTAGCTTTTCATCTAAGGATGTCGGACAAGTTCTTACAGTG
GCAGGCGCCAGTCTTCTTGTATACCAAATCTTTGTTTATCGTTGGCTCAATAATACGCTA
GGACCTGTAAACTCAACCCGCATCGCATCTGCCCTGTCTATACCAATTATTGCTGCTTAT
CCCTTTATGACACACTTGTCAGGAATAAGACTTGGTCTGGCTCTCTATATTGCAGCAATG
ATTAAAAGCGTTCTTGCTATAACTAGAGTTTCTGGCACTTCTCTCCTACAAAACAATGCT
GTGCCACAAGGGCAAAGAGGTGCTGCAAATGGAATAGCCACAACATTAATGTCCTTATTC
AAGTCTGTTGCTCCAGCTGGGGCAGGTATCCTATTCTCGTGGGCACAGAAGCGCCAGCAC
GCAGCGTTCTTTCCAGGTGATCAGATGGTGTTCCTTCTGCTGAACCTGACAGAGGTCCTT
GGGCTCTTGTTGACATTCAAGCCTTTCCTGGCAGTCCCCGAACACTACAAGTAAAACCTG
ACAGAGTACGACTGTGTTAGGTAGTGCTAGAGAGCGATGCGTGTGGTTCTGTGGCACTGG
CATGCTATAAGCGTGAAGACTGAAGAGTCTTGTTTTGTTGTACTACTTTTAGATAGATGT
AGCAAGTGTTGTTGGCACTGTGACCTAAAGCAAGCAACCGGGCAATCAATTGCAGTCTTG
GCATGCTCCGTTGCTCGTGTAAAAAAAAAAAAAAAA

Homology of Contig U35_18560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g04030.1	471	0.0	protein\|major facilitator superfamily antiporter, putative, expressed
Brachypodium v1_2	Bradi4g43580.2	486	0.0
Arabidopsis v10	AT5G13750.1	478	4e-169	\| Symbols: ZIFL1 \| zinc induced facilitator-like 1 \| chr5:4438318-4441289 FORWARD LENGTH=478