barSeed - Barley Seed Development Database

Probe CUST_13241_PI390587928

Source Contig U35_18569

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13241_PI390587928	Hv_44K_v2	GCACTCTGTAATGGGCATATCCAAAATTACAAGCTTTTCTTTTTAGCGAAGTATAACCAA	1513	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.009	1.644	1.156	0.841	0.425	0.439
Raw	37.455	51.286	29.856	35.873	4.339	5.587

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_18569	1588	3e-25	1514 - 1573	100	60 / 60	plus

Contig Sequence (1588 bp)

>U35_18569 1588 Hv_44K_v2
GTCCCTCTCATCCCATTTAAAACTTCCAGATCCACCTAGGGTTTGCGCCTCCTCCCTCCG
CCCCCCATCGCACAGGCCGCATCGAGAGAGGACGACGCCGAACTCGGACCGTCGGAAGCG
CCATGGAGAAGTACGAGAAGCTGGAGAAGGTCGGGGAGGGCACCTACGGCAAGGTGTATA
AGGCGATGGACAAGGCGACGGGCCAGGTGGTGGCGCTCAAGAAGACCCGCCTGGAGATGG
ACGACGAAGGGATCCCGCCCACCGCGCTCCGTGAGATCTCCCTCCTCCGCCTCCTCTCCA
GCTCCCTCTACGTCGTCCGCCTCCTCGCCGTCGAGCAGACTACCAAGGGCGGCGGCGCCG
GCGGTGGAGGGAAGCCCGTCCTCTACCTCGTCTTCGAGTTCCTTGACACTGACCTCAAGA
AGTTCGTCGACGCCTACCGCCGTGGGCCCGCCCCTAAGCCACTCCCAACACATGTCGTCA
AGAGCTTTTTGTATCAGTTATGCAAAGGAATTGCACACTGCCATGGACATGGTGTCCTTC
ATCGGGATTTAAAGCCCCAAAATCTGTTGGTTGACAAGGAGAAGATGATACTGAAAATTG
CAGATCTTGGGTTAAGTAGAGCTTTTACTGTTCCTATGAAAAGCTACACCCATGAAATCG
TAACACTTTGGTACAGAGCTCCTGAAGTACTGCTTGGAGCAACACATTACTCAACTGGTG
TTGATATTTGGTCCATTGGATGCATCTTTGCCGAGATGGTCAGAAAACAGGCTCTTTTCC
CTGGTGACTCTGAGTTACAGCAACTGCTTCACATTTTCAGGCTGATGGGAACTCCTACCG
AGGAGGATTGGCCTGGAGTAACTGCTCTGAGGGACTGGCACGAGTTTCCTCAGTGGAAAG
CACAAAGAATGACGCGTGCAGTCCCAACACTGGAAACAGAAGGAATTGACCTGCTATCGA
AAATGCTCCAGTTTGACCCGGCGAACAGGATCTCAGCCAAAGCCGCGCTAGAGCATCCCT
ACTTCAACAGCCTCGACAAGTCTCAGTTCTAGCTGTTGTAGCTACCGTGTGATTTCTCTC
AACTTGGTGTGTGTGCACTGCTCACCAACTTCCTCCGCCGTAAGATCGATGCTGAAAACG
CACCAACCCATGTTTCTTGAACCTACACCCAGCAACCCCGTGTTGCTAGTAGTTGGCTCC
CATGACCATGTGAACCCCATGTCCTAAACCTCCAGCAGGTGATTTGTCTTGAGAAGTATC
GGCTGAAGATGCTTGTTCTTCAGATCATGTAGAAGATTTTTTATTTGCTCTGTACGGAAT
TGTTTGATGAGATGGATTTGCGGACTTGTTTGTATAGTATAATAAGGTACTCCTACTAGT
ATTTGTCAAGAAAATGTTGCTTCGACGAGTGAAGTTATTTGGAGCTGCGAAGTGGTGAGA
GGCGTGTGTCTGTGGCAGGAGCTAATACTCCCTCCGTTCCTAAATGAGGGGGACGTTTGG
CCAGCTAAGGGGCGCACTCTGTAATGGGCATATCCAAAATTACAAGCTTTTCTTTTTAGC
GAAGTATAACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18569 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67160.1	304	0.0	protein\|cyclin-dependent kinase B1-1, putative, expressed
Brachypodium v1_2	Bradi4g25980.1	306	0.0
Arabidopsis v10	AT3G54180.1	309	5e-161	\| Symbols: CDC2B, CDKB1;1 \| cyclin-dependent kinase B1;1 \| chr3:20059882-20061250 FORWARD LENGTH=309