barSeed - Barley Seed Development Database

Probe CUST_1323_PI390587928

Source Contig U35_42057

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1323_PI390587928	Hv_44K_v2	AGCAAAGATGGGAAGCCTTGCATTGTGTGCCCAATTGATTTCGAGCTTTTTGTTTGGGTC	389	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.678	1.084	1.957	2.607	0.832	0.698
Raw	34.592	89.955	135.651	284.842	32.283	29.464

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376445	3068	2e-24	861 - 920	100	60 / 60	plus	None
MLOC	MLOC_60147.1	1335	2e-24	696 - 755	100	60 / 60	plus	None
JLOC1	JLOC1_39198.2	1265	8e-25	694 - 753	100	60 / 60	plus
JLOC1	JLOC1_39198.1	1504	8e-25	696 - 755	100	60 / 60	plus
Harvest21	ABC37422	493	3e-25	390 - 449	100	60 / 60	plus
Harvest35	U35_42057	493	3e-25	390 - 449	100	60 / 60	plus

Contig Sequence (493 bp)

>U35_42057 493 Hv_44K_v2
GCCTGGATCTCATCCCCCAGCCGCCCGACAAGTTCTTCGACGACGCCCGCGGCCACGCCA
AGTACCTTGGATGCTACATCCTCTCCTCCGAGGAGGGCAGCGAGCCGCTGCGGCTGGTCT
ACACCTGCCACGACAATTCGCGGGCGCGTGCCGCCGTCTTCTTGTCGGAAAGCAGGGAGT
GGCAGATCTTCCCGTGGTCGGAGGCTGTGACGCCACTGCCTGAAGACGAGCACTGGCTTA
AAGTTGGCACGCTGGTGAATGGGTTCGTCTACTGGATACACGCAAATGAGGCCTACATCC
TCGTGCTGAACACCGCGACGCTGCATTTCTCCCAAATGGATTTGCCGCCGACCTTGGTGG
CGCGAGACCTCGTATTCAGGGTTGGCGAGAGCAAAGATGGGAAGCCTTGCATTGTGTGCC
CAATTGATTTCGAGCTTTTTGTTTGGGTCCGGGGAACCGAGGATGACGGCATCGAGACAT
GGATATTCGACGA

Homology of Contig U35_42057 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g04620.1	412	7e-66
Arabidopsis v10	None