barSeed - Barley Seed Development Database

Probe CUST_13235_PI390587928

Source Contig U35_44838

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13235_PI390587928	Hv_44K_v2	TGCTTCCTCATCATCTACAAGCTGTAAAAAACCGCTAATATTGAATTTGGCACTCCTCCC	2	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.282	3.848	0.772	0.741	1.035	0.947
Raw	21.175	36.638	6.959	9.208	2.931	3.789

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373171	955	7e-23	890 - 950	98	60 / 61	plus	None
MLOC	MLOC_45223.1	420	7e-23	239 - 299	98	60 / 61	minus	None
Harvest21	ABC43034	342	3e-25	3 - 62	100	60 / 60	minus
Harvest35	U35_44838	342	3e-25	3 - 62	100	60 / 60	minus

Contig Sequence (342 bp)

>U35_44838 342 Hv_44K_v2
CGGGGAGGAGTGCCAAATTCAATATTAGCGGTTTTTTACAGCTTGTAGATGATGAGGAAG
CAGGGGAGCACGGCCCGCCGGTCGAACACCACCAGCTCGCCCTTGCCGCCGCGGACGGAG
TCGTACTCCTTGGCAGCGGCCTCGCCGGCCACTAGCCCCTCCGCCACCCGCCCAGCGATC
ACCCTGCACAGGAACATGGCCCGCCGGCCGGTCTCCGGCCCGCGCCCGCTGGCGTGCGCG
CCGCCGCTGCCGTCGAAGGTCCGGACGACGCGCAGGGACGCGCTGTCCGAGGGGGAGCAC
CCGTGCGGCGGGGCCGGGGAGAANCGCATCATCTCGTTGCCG

Homology of Contig U35_44838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None