barSeed - Barley Seed Development Database

Probe CUST_13232_PI390587928

Source Contig U35_20881

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13232_PI390587928	Hv_44K_v2	CCGTCTATCCCTCCGTGAAGTGTTAATATTCACACTATAAATATGATGATATCAATTGCT	695	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52704.1	860	2e-24	771 - 830	100	60 / 60	plus	ABC15111
JLOC1	JLOC1_33790.1	1230	8e-25	775 - 834	100	60 / 60	plus
Harvest21	ABC15111	777	3e-25	696 - 755	100	60 / 60	plus	ABC15111
Harvest35	U35_20881	777	3e-25	696 - 755	100	60 / 60	plus

Contig Sequence (777 bp)

>U35_20881 777 Hv_44K_v2
CTCCACTCTATTACTGAGCTTCGCCGTCAATGGCCACCCTTGTCAAGCACCTCATCCTGT
GCTCCAGCACTACCACATCGTCCTCTGCTACTCCGTCCCCGTCGAACCGTCGCCCGCCGT
CATCGCCCGACGGTGCCGACAAGCGAGCCCACCTGACGCAGTCCTCCACGCGCCGGCTCG
CAGTCGCCGCGTCAACGGCAATGGTCGCAACGGCCGCACTTTCCGCCCGGCGACCCGCCG
CGCCGCCCCCAGCCATGGCGGCGGAGGCGGCCGCTGTGCGGCTACCGGTGCCCCCGGGAA
CAGTGCCGAGGTGGGGCACGAGGTCGTACGTCAGAGAGAGGTTCTTCGAGCCCGGGCTGA
CCACGGAGGAGGCCGCGGCGCGCATCCGTCAAACGGCGGAGGGGATGCGGACGCTTCGGC
CAATGCTGGAGACCATGTCGTGGAAGTACGTACTGTTCTACGTGCGGCTCAAGTCCAAGT
ACCTCGACCTCGACCTCACCACCGCCATGGCCGGTGTCCCCGAGCCGCGCCGCCCCGAGT
ACGTCCTCGTCGCTAACGAGCTCGTCGACAATATGACCGAGTTCGACCGGTTTGTGCGGA
CTCCCAAGGTGTACGAGTCGTACCTCTACTATGAGAAGACCCTGAAGTCGCTGGATGACG
TGGCAGAGTTCCTTGGATGACCTAGGAATGTATTCCCGTCTATCCCTCCGTGAAGTGTTA
ATATTCACACTATAAATATGATGATATCAATTGCTATGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20881 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36850.1	226	1e-78	protein\|oxygen evolving enhancer protein 3, identical, putative, expressed
Brachypodium v1_2	Bradi3g46880.1	215	4e-83
Arabidopsis v10	AT1G14150.1	190	6e-54	\| Symbols: PQL1, PQL2 \| PsbQ-like 2 \| chr1:4839885-4840632 FORWARD LENGTH=190