barSeed - Barley Seed Development Database

Probe CUST_13226_PI390587928

Source Contig U35_20887

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13226_PI390587928	Hv_44K_v2	GTACTATGTGTGATTGTAGTGTACTTTGCATGTTGTATGAAATATTATGCCCAATTGGCT	749	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358391	1441	2e-24	1356 - 1415	100	60 / 60	plus	ABC13841
MLOC	MLOC_31898.1	386	2e-24	252 - 311	100	60 / 60	plus	ABC13841
JLOC1	JLOC1_20893.1	351	8e-25	243 - 302	100	60 / 60	plus
Harvest21	ABC13841	854	3e-25	750 - 809	100	60 / 60	plus	ABC13841
Harvest35	U35_20887	854	3e-25	750 - 809	100	60 / 60	plus

Contig Sequence (854 bp)

>U35_20887 854 Hv_44K_v2
CAGATCCACTGATCCAGATCGACGCCACGGCTCTCCAGCAACCAGGACGGCGATGGGATC
CGATGGGCGTGTTCTCCTCTGGCCACGGCGGAGAAGAAGCCAGGCGGTGAGGGCGAAGCA
TCCACCCGCTCCCGCACTTCCCCGTCCCGATCGATCAGGCCGCCGTCGCGCCCTCCTCCT
CCCCTCCCATCCGATGCAGGACCAGGCCGGGGCTTTGTCCTGTTTTGGGCGGTTTCCCTC
GGCCGGATCCTCTCCTCCCCGGCGCCCTACTGCCTCACCCCGAGCCCCCGCTTCCCGCCC
CCTCTCCGCGGCGACAGGAGGCGCCGGAACGTGCTCCTGGTCCTCGCCCACCCCGACGAT
AATATTTTCTTACGAATCAGTTGGAAGAGGAGAAGCTGGCGGTGCAGCAGCAGGAAACTG
ATAATTTTGTGTACCCCGACCAGGACCGTGCTGGTTACCGGAGGGGCCGGCTACATCGGC
AGCCACGCCGTGCTGCAACTGCTCGCCGCGGGCTTCCGCGCCGTCGTCGTCGACAGCCTC
GAGAACTCCTCCGAGCTCGCCGCTCGCCGGGGAACACGCGCGGAACCTCTCCTTCCACAA
GATGCTGGCCTTCATTCTTCAAAATTTGGGTGTACAGAAGCTTTAGGAAGAAGAATCCCG
AAGAAAACCCATTCCCACCAATCCGTTTTAGCTCACCGGAGCTAGTTATATGTATACTTA
GTTGTATTTTATAGCTGAGTACCAGATTTGTACTATGTGTGATTGTAGTGTACTTTGCAT
GTTGTATGAAATATTATGCCCAATTGGCTTTTTTAGAATCAAATTATCTAATTGCATAAA
AAAAAAAAAAAAAA

Homology of Contig U35_20887 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None