barSeed - Barley Seed Development Database

Probe CUST_13225_PI390587928

Source Contig U35_20888

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13225_PI390587928	Hv_44K_v2	GTCCATTGAAGAACCAGTGATTCGACCACATCACCCTTGTTTGGCTCTGAAATGTTTTTT	1079	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50821.1	1218	2e-24	44 - 103	100	60 / 60	minus	ABC16516
JLOC1	JLOC1_32410.1	1365	8e-25	1124 - 1183	100	60 / 60	plus
Harvest35	U35_20888	1158	3e-25	1080 - 1139	100	60 / 60	plus

Contig Sequence (1158 bp)

>U35_20888 1158 Hv_44K_v2
TACAGTGTACTCGGGAACCTGCAGAAGTCTAGGCCTGTTCTACCGAAGCGGAGGAGGGGT
GTGTCTCTGCTCCGTCGCCGATCTCGCCTCCGCCGCGAATCCCCCACCGGAAACGGCGAG
CAGATTCGCGCCGGGCTCGCGGCGATCTTTGATGAGATAAGCCCCCGGCCACCTCGGGGT
TCGCGATGCTGCGGAAGGCGGCCGTCGGGTTCCTCGCCTGCGTCGTGCTCTACCTCGCCT
TCTCCTCCTACCTCCGTAGCCAGAGGGCTGCATATGTTCTGTTACCAGCAGTTACTCACA
GGGTATACCTGGACGTGGAAATTGATGGCCAAAATATAGGTAGAATTGTCATCGGTCTTT
ATGGGGAAGTTGTGCCAAAAACAGTTGAAAATTTCAGAGCCCTTTGTACAGGTGAAAAGG
GTGATGGGCCCAAGGGTAAACCTCTTCACTATAAAGGAACACCGTTTCATCGAATCATCC
CAGGTTTCATGATTCAGGGTGGTGACATAGTTAGAGGTGATGGGAAATCAAGCGAGTCTA
TATATGGAGGCACCTTCCCAGATGAGAATTTCAGTGTGAAACACACACATCCAGGTGTTG
TTGCTATGGCAAATTCTGGAACTGATTCCAACGGATCCCAGTTCTACATAACCACAATCA
AGACAGGCTGGTTGGATGGGGAGCATGTAGTCTTTGGCAGGGTGATTCAGGGAATGGATT
ATGTCTACGCCATCGAAGGGGGCGCAGGGACGTACAGCGGCAAGCCCAGGAAGAAGGTGC
TGATCACTGACTCTGGTGAGATACCCAAGGAGAAATGGGATGAGGAAATTCAGTAGGCTG
CTTGGTCTGCTCTGTTGTCTATGGATTTGACACCACTCTTTCGTGACCTGTTTTCTTCGC
ACACCAGCCGTGCTTCGGGCAGGCTTCTGAATGTTGTACAGTGTAGTCAGCTTATCGCAT
GCCAAGACCTACTTGCATATGATCTGGTAGTGTTTTCCATGTTACGCTAGGGATTTTTGT
TGCTGGATCGACCTACCCCCTAGCATAGTATGCAGTAAGTTGCCAAACTGATGGCTAGAG
TCCATTGAAGAACCAGTGATTCGACCACATCACCCTTGTTTGGCTCTGAAATGTTTTTTT
TTTTCAGACACTACTTCT

Homology of Contig U35_20888 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36670.1	216	9e-130	protein\|peptidyl-prolyl cis-trans isomerase, putative, expressed
Brachypodium v1_2	Bradi4g36430.1	217	5e-141
Arabidopsis v10	AT4G34960.1	224	4e-105	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein \| chr4:16648865-16650646 FORWARD LENGTH=224