barSeed - Barley Seed Development Database

Probe CUST_13221_PI390587928

Source Contig U35_18570

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13221_PI390587928	Hv_44K_v2	ATCACCCTGAACTAATTTGGGCCTTGGATGCTTGAACCCCTGGGACAGTAAAGACTTAAA	777	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.878	1.615	1.026	0.870	0.361	0.366
Raw	2546.463	3410.033	1896.387	2447.554	375.171	410.281

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13440.1	1160	7e-23	1092 - 1148	100	57 / 57	plus	ABC12156
JLOC1	JLOC1_9099.1	1497	2e-21	1131 - 1187	98	56 / 57	plus
Harvest21	ABC12156	831	3e-25	758 - 817	100	60 / 60	plus	ABC12156
Harvest35	U35_18570	851	3e-25	778 - 837	100	60 / 60	plus

Contig Sequence (851 bp)

>U35_18570 851 Hv_44K_v2
GCCACCCCCGTATCGGAAGAGGGGCTCCAGGTGACCTACGGGAGCACGGTGAAGCTGATG
CACGAGAAGACCAAGGTGAGGCTTCACTCCCACGACGTGGCCTACGGCTCCGGCAGCGGC
CAGCAGTCCGTCACCGGCTTCCCCGAGATCGACGACTCCAATAGCTACTGGATTGTGAGA
CCTACTCTTGATTCATCAGCCAAACAAGGTGAGGCTATTGAAACTGGTAGCATCATCAGG
TTGCAACACATGAGGACACGGAGATGGTTACATAGCCACTTGCATGCTTCACCGTTATCT
GGTAACCTAGAGGTGAGCTGTTTTGGTGGTGATGGACAATCAGATACCGGTGACTATTGG
AGGCTAGAAATTGAGGGAAAGGACAAGGTATGGAAGCGAGATCAGAAGGTAAGATTGCGT
CATGTTGACACGGGAGGCTATCTGCACAGCCATAACAAGAAGTATAACAGGCTTGGTGGT
GGGCAGCAAGAGGTCTGTGGTGTTCGAGACAAGCGAGCTGAGAATATTTGGTCGACAGCG
GAGGGCGTTTATCTCCCAGTCGATGAAAGAAAGTGAACATAGCATCAGGAATTTTGTTGA
CATTTTCCATTTTTTTATCTGTTCGTGCTTTTAAATTAAACAAGGGATATAGTACCCAGA
ACTAGAATGATTGTTAGCGCAGTATTTTTCTATTTGGAAACGACGATTACAACTTAGTCG
TAAAAAAAAAAAAAAAACACACGCGGCTAACATGGTGAGTGCGACTCTGTCAGCATCATC
ACCCTGAACTAATTTGGGCCTTGGATGCTTGAACCCCTGGGACAGTAAAGACTTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_18570 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34190.1	218	1e-121	protein\|stromal cell-derived factor 2-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi3g36940.1	217	9e-133
Arabidopsis v10	AT2G25110.1	218	6e-102	\| Symbols: SDF2, ATSDL, AtSDF2 \| stromal cell-derived factor 2-like protein precursor \| chr2:10684428-10685838 FORWARD LENGTH=218