barSeed - Barley Seed Development Database

Probe CUST_13219_PI390587928

Source Contig U35_18571

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13219_PI390587928	Hv_44K_v2	GTTTCCATAAGCAAAATTGTTACCGGGACCTGATAAACTAATTAACGGCACTTTCCTAAA	1814	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.407	1.616	1.206	0.874	0.383	0.384
Raw	2639.347	4746.377	3052.240	3425.490	534.506	585.115

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37523.1	6109	2e-23	5998 - 6055	100	58 / 58	plus	ABC20396
JLOC1	JLOC1_24301.1	6140	1e-23	6001 - 6058	100	58 / 58	plus
Harvest21	ABC20396	739	4e-24	19 - 76	100	58 / 58	minus	ABC20396
Harvest35	U35_18571	1890	3e-25	1815 - 1874	100	60 / 60	plus

Contig Sequence (1890 bp)

>U35_18571 1890 Hv_44K_v2
AAGCTGGCTCTCAGGATCTTCATCTGGAAGCCGGAGATTACCACCACCTGCCCCTTCCTC
ATCTTTGAAGAAGTTGCGGTCTCTATCTGCATTAGATTCCCGCCCAGGCACTTTTTCGAA
AAGAACTCCAGATGACTTGGAGGATGGAGAGATTGCATTATCAGGGGACTCACATATGGA
TCTACAGCAATCAGGAAGCTGGAACCATGAACGGGATGATGGTGAGGATGAACAGGTGCT
GCAACCAAAAATAAAACGCAAAAGGAGTCTCCGAACTCGTCCGAGACCTAATACTGATAA
ACAGGAAGATAGATCTGGTGCAGATGGTACCTTCCCCCAACGTGGTGCTCGCCTTTTATT
CCCAGGAGATGGTGATTATGATTCACAGCAAGATGCCCATGCTCTTGCAGACCCTACTTC
TAGGCAGCAAGACACAGTTCATCCGATAGTGAAACAGAAGCGTAACATGCCATCTGGAAA
GGCCTCTCCTGCTTCTAGAGCAGGGAAATCCACCCACTTGTCTGGGTCTGCCGAGGGATC
TGCTGAACACCCCAAGCAGAATTGGAGCAACAAGGTCATCAATTCTGCTGGCACAAAGAT
GTCTGACAGTATGCAAAGAAAGTGCAAGAATGTAATAAGCAAGCTTTGGAGGAGAATTGG
CAAAGAGGGACACCAAAAAATACCCAACATAGCTTCTTGGTGGCGAAGGAATGAAAATTC
TTCATCCAAAGGTGTGGCTGGAAGCACCCTCGACCTACAGAAAATCGAATTGCGAGTTGA
TGGATTAGAGTATAGCGGTGTAACTGAGTTTATAGCGGACATGCAGCAGATGTTGAAAAG
TGTGGTTCAACATTTCGGCTACAGACATGAGGTCCGGGTAGAAGCTGAGATTCTCCACAA
CTTATTCTTCAACATAATGAAGATCGCCTTCCCAGACTCTGACTTCCAAGAGGTCAAGGA
CTCGCTGTCGTTTTCGAACCCTGGAGGAGGCGCGGGCAGCACGGCTGCCCCATCAGCAAA
GCACCTGGCTTCAGGCCTGAAGCGTCGTTCCGCCACCACCGAAGCAGAGCAGCATGGTCC
CGGCAGCGGCAAGCACAGCCATCACGCGTCGGCTGGTGAGGCTCCTAGCCGGGCCAAACC
AGAGAGGGACTCGAGGCACTCAGGGTCAGGAAGCAGGGACCAGAGCCTCGACAGCCCAGG
GCTGCCGTTGCACCCCGGCGACCTGTTCATTGTCAAGAAGAAGAGGCAAGATCGGGTTCG
GACCAGTGTCGGGTCCCCGTCCAGCTCAGGCCCCCGAGGACCGCTCTCCCCGACCAACAC
TGGCCGGTTGGGCCCGGTGCCATCGCCCAGAGGTGCTAGGACGCCGTTGCAGAGGGACTC
TCACCCGTCCCAGCAGTCCATGCCTGGGTGGGGCGCGCACGCTGACCGCGGGGGGAGCTC
GCCACCCGGCATCGGGGACATCCACTGGGCCAAGCCCGCCAAGCGGCAGCGGACCGACAC
TGGCAAGAGACGGCCAAGCCACTTGTGACGCGGCATACACATTCTCCATGCATCATAATC
GCCGCCATGTGTCGCGGACTTACGGCCATGAGAAGAAGGGAATGTTGTGCGGCTTAGGAG
TATTTTCTTTCTGTATGTTGGGTATTTGTTTGTTTACTGTAAAGAGGAACAGCACTTTAA
TAGCCTTTGTTATGTGGTAGGTTGTTTAGTGGTGCAACCAGAGGATGCATCTGTTCTCAT
GTGAAAGGGACAGTGATAATGGGAATGAGCTGGTGTTTAGTTAATAATCAGTTAGTAATT
ATCATCTGTTGTATGTTTCCATAAGCAAAATTGTTACCGGGACCTGATAAACTAATTAAC
GGCACTTTCCTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18571 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02290.1	2201	0.0	protein\|SNF2 family N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi3g01297.1	2197	0.0
Arabidopsis v10	AT2G46020.2	2193	4e-79	\| Symbols: CHR2, ATBRM, BRM, CHA2 \| transcription regulatory protein SNF2, putative \| chr2:18923304-18931769 FORWARD LENGTH=2193