barSeed - Barley Seed Development Database

Probe CUST_13217_PI390587928

Source Contig U35_18572

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13217_PI390587928	Hv_44K_v2	TTGATTTACGGTGCAATTGGAAGGATTGCCTTGAGTTTGCACTTTGTGTTGCGCAAAAAA	1164	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.272	0.341	0.937	2.049	1.217	1.329
Raw	840.084	1663.306	4138.433	13769.210	2925.163	3423.980

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24777.4	1075	6e-21	958 - 1013	98	55 / 56	plus
JLOC1	JLOC1_24778.1	513	6e-21	128 - 183	98	55 / 56	minus
JLOC1	JLOC1_24777.3	617	6e-21	410 - 465	98	55 / 56	plus
JLOC1	JLOC1_24777.2	661	6e-21	454 - 509	98	55 / 56	plus
JLOC1	JLOC1_24777.1	700	6e-21	493 - 548	98	55 / 56	plus
Harvest21	ABC09902	1230	3e-25	1165 - 1224	100	60 / 60	plus	ABC09902
Harvest35	U35_18572	1230	3e-25	1165 - 1224	100	60 / 60	plus

Contig Sequence (1230 bp)

>U35_18572 1230 Hv_44K_v2
GTTGGTCCTACCAACTACAAGAACGGTCCTCCTCTCCCTCTCTATCTCCGATCCCCCTCC
GGCGCCGGCGCGCCGCTCCCAGCGTCCAAGCACCGCGTTCCCGTGAACCCGCCTTCTCCC
AGCCCCCTCAGCGCCGCCCATGGCTTCTTCCACGGCCGCCGCCTTCTCCGCTCTCTCACC
GCCGCCCGTTGGCGCCGAGAGGCCGGTTCCCCAGGGCCGCCTCCTCTTCCGCGCCTCCCG
TGCCGGCTCCAGACCCCTACGGATCAACTCATCCCGACACCAAGGGCTCTCGCCGGCGCC
TAGAGCGGCCAAGGCTGTGGAGGCAGCCAAGGCTGACCCTCTAAATGTCATGATAGCGGG
TGCTCCGGCGTCCGGGAAGGGCACGCAGTGCGAGCTAATCAAGGCCAAATATGGTCTGGT
GCACATTTCAGCCGGAGATTTGTTAAGGGCAGAAATCGCCACAGGCACCGACAATGGGAA
GCAGGCCAAGGAGTTCATGGAGAAGGGAAAGCTGGTTCCCGACGAGATCGTTGTTAATAT
GGTGAAGGGGCGTCTTCTGCAACCAGATGCTCAGGAAAAGGGTTGGCTTTTGGATGGTTA
CCCGAGAAGTTATTCACAGGCAATGGCACTGGAAACTCTTGGAATCCGGCCTGACATTTT
CATTCTATTAGATGTTCCGGATGAACTTCTTGTTGAAAGGGTAGTTGGCAGACGGCTGGA
TCCTGAAACTGGGAAAATATACCATCTAAAGTATTCTCCACCTGAGAATGAAGAAATTGC
ATCCAGGCTGACACAAAGATTTGATGATACAGAAGAAAAGGTTAAGCTGAGGTTGCAGAC
ACATTATCAAAATATCGAGTCCTTGGTTTCAATATATGAAGATGTTATAGTCAAGGTAAA
AGGAGATACCACGGTGGAAGATGTGTTCGGTGAGATCGACAAGCTGCTCACGTCCAGCCT
TGATAAGAAAACAGAAATGGTGGCTAGCTAACTCATAAGCAGAGAAAGCTGTGCGAACCA
GACATGTGGCGGAAGCATGATTTTATTTTATTTTTTGAAGACATGCAGGTGACAAAGCAT
TGATAGGATGATATTTAGAAAGCCCTTTGTCATACATGGATGTAAATGCGTCACTGTTTT
GTAATGATCTTTACTAGGAATGCATTGATTTACGGTGCAATTGGAAGGATTGCCTTGAGT
TTGCACTTTGTGTTGCGCAAAAAAAAATAA

Homology of Contig U35_18572 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g01770.1	291	1e-141	protein\|adenylate kinase, putative, expressed
Brachypodium v1_2	Bradi3g13360.1	288	6e-150
Arabidopsis v10	AT5G47840.1	283	5e-102	\| Symbols: AMK2 \| adenosine monophosphate kinase \| chr5:19375488-19378058 FORWARD LENGTH=283