barSeed - Barley Seed Development Database

Probe CUST_13213_PI390587928

Source Contig U35_14573

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13213_PI390587928	Hv_44K_v2	CTCGACCACATCTACCACGACCCGCACGCCACCCCCTCCCTCCGCCGCGCGCTCGACCAC	254	GeneList: grey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.913	0.955	1.051	0.916	1.105	1.075
Raw	305.057	438.256	473.367	612.834	269.531	289.183

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_14573	474	3e-25	255 - 314	100	60 / 60	plus

Contig Sequence (474 bp)

>U35_14573 474 Hv_44K_v2
TCGAGCACTGTTGGCCTCGGAAGGAAAGAATGGCCGACTCCTCCACCACGCCGCACTCCA
ACGGCGGCACCGTCGCCGTCGCCGAGGAGGAGGAGACCCCCACCGTGCCCCGCTCTCCGG
CGCCGCCGCGGAAGGTGGCGCTGGTGACGGGCATCACGGGGCAGGACGGGAGCTACCTGA
CGGAGCTGCTCCTGTCCAAGGGGTACGAGGTGCACGGCCTCATCCGCCGCTCCTCCAACT
TCAACACCCAGCGCCTCGACCACATCTACCACGACCCGCACGCCACCCCCTCCCTCCGCC
GCGCGCTCGACCACGTCCTCCCCGACGAGGTCTACAACCTCGCCGCCCAGTCCCACGTCG
CCGTCTCCTTCGAGGTCCCCGACTACACCGCCGACGTCACCGCCACCGGCGCGCTCCGCC
TCCTCGAGGCCGTCCGCCTCTCCGCCAAGCCCATGCGCTACTACCAGGCCGGGT

Homology of Contig U35_14573 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04620.1	376	2e-71	protein\|GDP-mannose 4,6 dehydratase 2, putative, expressed
Brachypodium v1_2	Bradi1g51460.1	378	1e-74
Arabidopsis v10	AT5G66280.1	361	6e-54	\| Symbols: GMD1 \| GDP-D-mannose 4,6-dehydratase 1 \| chr5:26476434-26477519 FORWARD LENGTH=361