barSeed - Barley Seed Development Database

Probe CUST_13212_PI390587928

Source Contig U35_14574

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13212_PI390587928	Hv_44K_v2	ATTGATATTTACGACTGTCAGAATCTTATTTTACCGTGTGTGTTGGGTTGGTGGAAAAAA	968	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.784	1.453	1.304	0.773	0.200	0.160
Raw	896.252	1146.604	892.588	832.912	76.486	66.952

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359211	1073	3e-22	935 - 990	100	56 / 56	plus	ABC02777
Harvest21	ABC02777	1057	3e-25	987 - 1046	100	60 / 60	plus	ABC02777
Harvest35	U35_14574	1039	3e-25	969 - 1028	100	60 / 60	plus

Contig Sequence (1039 bp)

>U35_14574 1039 Hv_44K_v2
CTAGGGTTTCCACTCCGCCGCGCCGCCCCCTCCCCCCTCCCTGCATCGTCGCGGAACAGT
GCTCCCACCGCCGGCGCCATGAGTAAGTTGCAGAGCGATGCCCTGAGGGAGGCTATCACA
AACATTACCAATGACTGCCGTGAGAAGAACCGCAAGTTCGTTGAAACCATTGAGCTGCAG
ATTGGTCTGAAGAACTATGACCCGCAAAAGGACAAACGTTTCAGTGGCTCTGTTAAGCTT
CCTCACATCCCTCGCCCAAAGATGAGGGTTTGCATGCTTGGTGATGCCCAGCATGTTGAA
GAGGCAGGGAAAATGGGCCTTGACTGTATGGATGTGGAATCGCTGAAGAAGATGAACAAA
AACAAGAAGCTAGTCAAGAAGCTTGCAAAGAAGTATCATGCTTTCCTTGCATCTGAGGCT
ATCATTAAGCAGATTCCCCGACTTCTTGGACCTGGTCTTAACAAGGCAGGAAAGTTTCCA
ACTTTGGTGTCTCACCAGGAGTCCCTTGAGTCCAAGGTTAATGAGACCAAGGCCACTGTC
AAGTTCCAGTTGAAAAAGGTGCTTTGCATGGGTGTTGCCGTTGGCCACCTGGGTATGGAG
GAGAAGCAGATCTTCCAGAACGTGCAGATGAGCGTGAACTTCCTTGTCTCTCTGTTGAAG
AAGAATTGGCAAAACGTGCGGTGCCTGTACCTGAAGAGCACAATGGGAAAGGTGTACCGG
TTGTTCTAGACTCTAGTCTTCTAGGATTTCCAGGAGATTGACAACTTGGGAACTTTTGTT
GCTTTCTCAATTATCAAATTTTCGTGCGCGTCGAGTGACAATTATTGTCTTGTACTGAGA
TGGTTTGTTCTATTGTCTGGAACTTCATGACATTTTAAAAAAAAAAAAAAAAATCCGTTG
TCCCTGTGCCTTCCTACTGTTCTGCTAGCTGTCAATCATCAGCTTAACGCTAGATTCAGC
ATTGGTCCATTGATATTTACGACTGTCAGAATCTTATTTTACCGTGTGTGTTGGGTTGGT
GGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14574 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g21660.1	217	2e-124	protein\|L1P family of ribosomal proteins domain containing protein, expressed
Brachypodium v1_2	Bradi2g55600.2	217	2e-128
Arabidopsis v10	AT1G08360.1	216	2e-118	Ribosomal protein L1p/L10e family \| chr1:2636231-2637694 FORWARD LENGTH=216