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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13206_PI390587928Hv_44K_v2GTTTCGTGGTGTTGTACGTCCATTCGTCTTATCGGATTGAATAACATTCTTTTCAAAAAA732GeneList: lightyellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1470.2581.2052.0881.1931.190
Raw 48.368119.523570.2811481.605315.480336.213



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC465514593e-2512 - 7110060 / 60minusABC46551
Harvest35U35_145798033e-25733 - 79210060 / 60plus



Contig Sequence (803 bp)

>U35_14579 803 Hv_44K_v2
CAACCTCGGCTCCGCCCTCGTGTCCGTCGCCACGGTCGACCGCTACGGTCGCAGGCCGCT
GTTCTTGGCTGGTGGGCTCGTCATGATCATGTGCCAGGTTGCGGTTGCGTGGATCATGGG
GTCGCAGATCGGCCGTGACGGCGAGTCCACCATGGCCAGGAAGTACTCCGTCGCGGTGCT
GGCTCTGACCTGCGTCTTTTCGGCGTCCTTCGGGTGGTCGTGGGGTCCCCTCACGTGGGT
GATCCCCGGCGAGATATTCCCGGTGGAGGTCCGCTCGGCCGGGCAGGGAATCAGCGTGGC
CGTCAACCTCGGCGCCACCTTCGTGCTCACGCAAACCTTCCTATCCATGCTCTGCAGCTT
CAAGTACGCCACCTTCATCTACTACGCGGCCTGGGTCGCCGTCATGACAGCCTTCGTGGT
GGCATTCCTGCCGGAGACCAAGGGGGTGCCCCTCGAGGCCATGGGCGCCGTCTGGGCGCG
CCACTGGTACTGGGGACGCTTCGTCAACGTGCAGCAGCAGCCGCCGCCCAAGAACACCGA
TGCGCTCATAAACTGACGACGTTTAGCGCCTTTGCCGTCGTGGCCTCATGGGCGTGGCTT
TCATCTCCGTACCCGCGGCACGAGTTGTGTGTATGTGTGTTCGTATGTGGCCATGTGGGT
ATATGGAGCCGCAGTGCTGTCTGTGAAAAGATTGTTTCTTTTTTCCTTTTCTTTTGTGGA
AGAAAGATGTTTGTTTCGTGGTGTTGTACGTCCATTCGTCTTATCGGATTGAATAACATT
CTTTTCAAAAAAAAAAAAAAAAA



Homology of Contig U35_14579 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g38220.15182e-109protein|transporter family protein, putative, expressed
Brachypodium v1_2Bradi5g12070.15093e-118
Arabidopsis v10AT1G34580.15063e-68Major facilitator superfamily protein | chr1:12660631-12663553 FORWARD LENGTH=506