- Probe CUST_13189_PI390587928
- Source Contig U35_38530
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13189_PI390587928 | Hv_44K_v2 | AACCTGTGTGACTTCAAACCAGTTCAATTCTTGAGCCCTTTGGTTAACTTTGCATGGACG | 251 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.657 | 1.754 | 1.138 | 0.795 | 0.530 | 0.717 |
| Raw | 520.327 | 847.379 | 477.167 | 521.650 | 121.732 | 181.900 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_38975.1 | 914 | 2e-24 | 621 - 680 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_25389.1 | 741 | 8e-25 | 608 - 667 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38530 | 332 | 3e-25 | 252 - 311 | 100 | 60 / 60 | plus |
Contig Sequence (332 bp)
>U35_38530 332 Hv_44K_v2 GGACCTGATGGTGGTATGCACTAGCGCTACAGCTTTACCAAGTACCAGGTGTGCCCAGCC ATGGATGCCGGTGATATATATGTTCTGCGACTGGAACCCTCTGCCGCTCCAGCTGAGCTG AGCAGAGCAGAGCAGAGCGTGCTATCCAAGACGGCTTGGTGCTGTGTAGGTGAGGAGCAG CCTAGTTTACTTCCAGCCTGCTTTGTGTGACACGATTACTTTGTGATTTTCAAGACAGCT TGGTGCTGCTCAACCTGTGTGACTTCAAACCAGTTCAATTCTTGAGCCCTTTGGTTAACT TTGCATGGACGTTATAAAAAAAAAAAAAAAAA
Homology of Contig U35_38530 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |