barSeed - Barley Seed Development Database

Probe CUST_13188_PI390587928

Source Contig U35_38531

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13188_PI390587928	Hv_44K_v2	TGCACATCGTCGACGAAGCTATCACAGATATGCGGAACCCGGTTCTGCGGGAGGCTGATA	481	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4818.3	1232	2e-24	618 - 677	100	60 / 60	minus	ABC21671
MLOC	MLOC_4818.4	1540	2e-24	923 - 982	100	60 / 60	minus	None
MLOC	MLOC_4818.1	1733	2e-24	1143 - 1202	100	60 / 60	minus	ABC21671
JLOC1	JLOC1_3052.3	1207	8e-25	528 - 587	100	60 / 60	plus
JLOC1	JLOC1_3052.2	1731	8e-25	528 - 587	100	60 / 60	plus
JLOC1	JLOC1_3052.1	1741	8e-25	528 - 587	100	60 / 60	plus
Harvest35	U35_38531	542	3e-25	482 - 541	100	60 / 60	plus

Contig Sequence (542 bp)

>U35_38531 542 Hv_44K_v2
TCCACCGCCTTCGCCTACTCCGCCGCCCCCCTCCTCCCCTTCCCAGCCCTCTAACCACCG
CCGTAGGACCTCTCCTCGCCGACCCTCTGCCCCCTCGGGCATCCCAGCGGCGCGGCAATG
AAGCACCGCCGGCGGTCGAAGCAGCAGAAGCTCAACTCCTTACCTCCCCCTACACCCCCG
GCCACCCGCGCTCCATGTCCCATGCCAAGGCCGAGCGCCAGCCCGAAAAGCCCTCCCCCC
GCCACCCCTCCGCCGGAGCAGGGGCCGGAAGTGGTAGTCCCCGAGGACTGGGCCCTGGCC
ACCGACGCCATCTCCTCCGATCTCTCGTCTCCGGTCGTCCTCGTGTGCGGGCCCTCCAAC
AGCGGCAAGTCGACCTTCACCCGCCTCCTCCTCAACAAGCTGCTCCCGAGCTACGGGAGG
GTCGGGTATCTGGACACCGACGTGGGGCAGCCGGAGTTCTCGCCGCCGGGGTGCCTCTCC
CTGCACATCGTCGACGAAGCTATCACAGATATGCGGAACCCGGTTCTGCGGGAGGCTGAT
AG

Homology of Contig U35_38531 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None